RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 LRRC37AA6NMS7 1700 aa16.61■□□□□ 0.25
COL5A1-206ENST00000465877 ADCY9O60503 1353 aa16.61■□□□□ 0.25
COL5A1-206ENST00000465877 TCIRG1Q13488 830 aa16.6■□□□□ 0.25
COL5A1-206ENST00000465877 PPP1R42Q7Z4L9 355 aa16.6■□□□□ 0.25
COL5A1-206ENST00000465877 TTLL6Q8N841 843 aa16.6■□□□□ 0.25
COL5A1-206ENST00000465877 TAF1P21675 1872 aa16.6■□□□□ 0.25
COL5A1-206ENST00000465877 TCERG1O14776 1098 aaKnown RBP16.59■□□□□ 0.25
COL5A1-206ENST00000465877 SRGNP10124 158 aa16.59■□□□□ 0.25
COL5A1-206ENST00000465877 NLRP10Q86W26 655 aa16.59■□□□□ 0.25
COL5A1-206ENST00000465877 ZNF622Q969S3 477 aaKnown RBP eCLIP16.59■□□□□ 0.25
COL5A1-206ENST00000465877 KLRG2A4D1S0 409 aaPredicted RBP16.58■□□□□ 0.24
COL5A1-206ENST00000465877 STYK1Q6J9G0 422 aa16.58■□□□□ 0.24
COL5A1-206ENST00000465877 RIC3Q7Z5B4 369 aa16.58■□□□□ 0.24
COL5A1-206ENST00000465877 MASTLQ96GX5 879 aa16.58■□□□□ 0.24
COL5A1-206ENST00000465877 UTP14AQ9BVJ6 771 aaKnown RBP16.58■□□□□ 0.24
COL5A1-206ENST00000465877 SPEF2Q9C093 1822 aa16.58■□□□□ 0.24
COL5A1-206ENST00000465877 E9PSI1 815 aa16.57■□□□□ 0.24
COL5A1-206ENST00000465877 DDX58O95786 925 aaKnown RBP16.57■□□□□ 0.24
COL5A1-206ENST00000465877 ISCA1Q9BUE6 129 aa16.57■□□□□ 0.24
COL5A1-206ENST00000465877 ATP5J2-PTCD1G3V325 749 aa16.56■□□□□ 0.24
COL5A1-206ENST00000465877 VAMP4O75379 141 aa16.56■□□□□ 0.24
COL5A1-206ENST00000465877 NPR1P16066 1061 aa16.56■□□□□ 0.24
COL5A1-206ENST00000465877 CRY2Q49AN0 593 aa16.56■□□□□ 0.24
COL5A1-206ENST00000465877 PRPF40BQ6NWY9 871 aaKnown RBP16.56■□□□□ 0.24
COL5A1-206ENST00000465877 ARHGAP27Q6ZUM4 889 aa16.56■□□□□ 0.24
COL5A1-206ENST00000465877 SH3TC1Q8TE82 1336 aa16.55■□□□□ 0.24
COL5A1-206ENST00000465877 G2E3Q7L622 706 aa16.55■□□□□ 0.24
COL5A1-206ENST00000465877 CNKSR1Q969H4 720 aa16.55■□□□□ 0.24
COL5A1-206ENST00000465877 TRMT112Q9UI30 125 aaKnown RBP16.55■□□□□ 0.24
COL5A1-206ENST00000465877 COL4A1P02462 1669 aa16.54■□□□□ 0.24
COL5A1-206ENST00000465877 SLC4A2P04920 1241 aa16.54■□□□□ 0.24
COL5A1-206ENST00000465877 FLIIQ13045 1269 aa16.54■□□□□ 0.24
COL5A1-206ENST00000465877 C3orf67Q6ZVT6 689 aa16.54■□□□□ 0.24
COL5A1-206ENST00000465877 ZNF428Q96B54 188 aa16.54■□□□□ 0.24
COL5A1-206ENST00000465877 MYD88Q99836 296 aa16.54■□□□□ 0.24
COL5A1-206ENST00000465877 MAP3K2Q9Y2U5 619 aa16.54■□□□□ 0.24
COL5A1-206ENST00000465877 SNED1Q8TER0 1413 aa16.53■□□□□ 0.24
COL5A1-206ENST00000465877 RASSF7Q02833 373 aa16.53■□□□□ 0.24
COL5A1-206ENST00000465877 SLFN5Q08AF3 891 aa16.53■□□□□ 0.24
COL5A1-206ENST00000465877 RPGRQ92834 1020 aaKnown RBP16.53■□□□□ 0.24
COL5A1-206ENST00000465877 ZNF219Q9P2Y4 722 aaPredicted RBP16.53■□□□□ 0.24
COL5A1-206ENST00000465877 PI4KAP2A4QPH2 592 aa16.52■□□□□ 0.24
COL5A1-206ENST00000465877 NFKBIEO00221 500 aa16.52■□□□□ 0.24
COL5A1-206ENST00000465877 C21orf2O43822 256 aa16.52■□□□□ 0.24
COL5A1-206ENST00000465877 TRIM28Q13263 835 aaKnown RBP16.52■□□□□ 0.24
COL5A1-206ENST00000465877 FKBP5Q13451 457 aaPredicted RBP16.52■□□□□ 0.24
COL5A1-206ENST00000465877 KSR2Q6VAB6 950 aa16.52■□□□□ 0.24
COL5A1-206ENST00000465877 SYNE4Q8N205 404 aa16.52■□□□□ 0.24
COL5A1-206ENST00000465877 PI4KAP1Q8N8J0 262 aa16.52■□□□□ 0.24
COL5A1-206ENST00000465877 ZNF784Q8NCA9 323 aaPredicted RBP16.52■□□□□ 0.24
COL5A1-206ENST00000465877 CDCA7LQ96GN5 454 aa16.52■□□□□ 0.24
COL5A1-206ENST00000465877 METTL22Q9BUU2 404 aaPredicted RBP16.52■□□□□ 0.24
COL5A1-206ENST00000465877 LTBP1Q14766 1721 aa16.51■□□□□ 0.23
COL5A1-206ENST00000465877 HCLS1P14317 486 aaPredicted RBP16.51■□□□□ 0.23
COL5A1-206ENST00000465877 SLC10A5Q5PT55 438 aa16.51■□□□□ 0.23
COL5A1-206ENST00000465877 NLRP3Q96P20 1036 aa16.51■□□□□ 0.23
COL5A1-206ENST00000465877 ALDH1B1P30837 517 aa16.5■□□□□ 0.23
COL5A1-206ENST00000465877 SOGA3Q5TF21 947 aa16.5■□□□□ 0.23
COL5A1-206ENST00000465877 CCDC191Q8NCU4 936 aa16.5■□□□□ 0.23
COL5A1-206ENST00000465877 FAM89AQ96GI7 184 aa16.5■□□□□ 0.23
COL5A1-206ENST00000465877 CWC25Q9NXE8 425 aaPredicted RBP16.5■□□□□ 0.23
COL5A1-206ENST00000465877 ABCC4O15439 1325 aa16.49■□□□□ 0.23
COL5A1-206ENST00000465877 A0A1B0GUL6 1792 aa16.49■□□□□ 0.23
COL5A1-206ENST00000465877 IGKV5-2P06315 115 aa16.49■□□□□ 0.23
COL5A1-206ENST00000465877 HOXA10P31260 410 aaPredicted RBP16.49■□□□□ 0.23
COL5A1-206ENST00000465877 NEXNQ0ZGT2 675 aa16.49■□□□□ 0.23
COL5A1-206ENST00000465877 CCDC93Q567U6 631 aa16.49■□□□□ 0.23
COL5A1-206ENST00000465877 C9orf131Q5VYM1 1079 aa16.49■□□□□ 0.23
COL5A1-206ENST00000465877 RBM17Q96I25 401 aaKnown RBP16.49■□□□□ 0.23
COL5A1-206ENST00000465877 RNF181Q9P0P0 153 aa16.49■□□□□ 0.23
COL5A1-206ENST00000465877 LTBP3Q9NS15 1303 aa16.48■□□□□ 0.23
COL5A1-206ENST00000465877 DUOX1Q9NRD9 1551 aa16.48■□□□□ 0.23
COL5A1-206ENST00000465877 PRELPP51888 382 aa16.48■□□□□ 0.23
COL5A1-206ENST00000465877 HNRNPUQ00839 825 aaKnown RBP eCLIP16.48■□□□□ 0.23
COL5A1-206ENST00000465877 RTL5Q5HYW3 569 aaPredicted RBP16.48■□□□□ 0.23
COL5A1-206ENST00000465877 TRMT2AQ8IZ69 625 aaKnown RBP16.48■□□□□ 0.23
COL5A1-206ENST00000465877 ZBTB38Q8NAP3 1195 aaPredicted RBP16.48■□□□□ 0.23
COL5A1-206ENST00000465877 DNAAF4Q8WXU2 420 aa16.48■□□□□ 0.23
COL5A1-206ENST00000465877 NEURL1BA8MQ27 555 aa16.47■□□□□ 0.23
COL5A1-206ENST00000465877 IRS4O14654 1257 aaPredicted RBP16.47■□□□□ 0.23
COL5A1-206ENST00000465877 PPEF1O14829 653 aaPredicted RBP16.47■□□□□ 0.23
COL5A1-206ENST00000465877 LMNB1P20700 586 aa16.47■□□□□ 0.23
COL5A1-206ENST00000465877 CWF19L2Q2TBE0 894 aaKnown RBP16.47■□□□□ 0.23
COL5A1-206ENST00000465877 C7orf43Q8WVR3 580 aa16.47■□□□□ 0.23
COL5A1-206ENST00000465877 CRAMP1Q96RY5 1269 aa16.47■□□□□ 0.23
COL5A1-206ENST00000465877 TAOK3Q9H2K8 898 aa16.47■□□□□ 0.23
COL5A1-206ENST00000465877 CDHR2Q9BYE9 1310 aa16.46■□□□□ 0.23
COL5A1-206ENST00000465877 ZC3H4Q9UPT8 1303 aaKnown RBP16.46■□□□□ 0.23
COL5A1-206ENST00000465877 PCCAP05165 728 aaPredicted RBP16.46■□□□□ 0.23
COL5A1-206ENST00000465877 OLFM4Q6UX06 510 aa16.46■□□□□ 0.23
COL5A1-206ENST00000465877 SLC51AQ86UW1 340 aa16.45■□□□□ 0.22
COL5A1-206ENST00000465877 WDR90Q96KV7 1748 aa16.45■□□□□ 0.22
COL5A1-206ENST00000465877 COL4A5P29400 1685 aa16.44■□□□□ 0.22
COL5A1-206ENST00000465877 F6X3S4 739 aa16.44■□□□□ 0.22
COL5A1-206ENST00000465877 DDX46Q7L014 1031 aaKnown RBP16.44■□□□□ 0.22
COL5A1-206ENST00000465877 ZNF526Q8TF50 670 aaPredicted RBP16.44■□□□□ 0.22
COL5A1-206ENST00000465877 CT47B1P0C2W7 299 aaPredicted RBP16.43■□□□□ 0.22
COL5A1-206ENST00000465877 HSP90B1P14625 803 aaKnown RBP16.43■□□□□ 0.22
COL5A1-206ENST00000465877 FKBP4Q02790 459 aaKnown RBP eCLIP16.43■□□□□ 0.22
COL5A1-206ENST00000465877 GRAPQ13588 217 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms