RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 TCIRG1Q13488 830 aa28.26■■■□□ 2.11
LIME1-203ENST00000465591 PPP1R42Q7Z4L9 355 aa28.26■■■□□ 2.11
LIME1-203ENST00000465591 NLRP10Q86W26 655 aa28.26■■■□□ 2.11
LIME1-203ENST00000465591 TAOK3Q9H2K8 898 aa28.26■■■□□ 2.11
LIME1-203ENST00000465591 LAMB2P55268 1798 aa28.25■■■□□ 2.11
LIME1-203ENST00000465591 TSR2Q969E8 191 aaKnown RBP28.25■■■□□ 2.11
LIME1-203ENST00000465591 UTP14AQ9BVJ6 771 aaKnown RBP28.25■■■□□ 2.11
LIME1-203ENST00000465591 ZC3H4Q9UPT8 1303 aaKnown RBP28.24■■■□□ 2.11
LIME1-203ENST00000465591 HSP90AB3PQ58FF7 597 aa28.24■■■□□ 2.11
LIME1-203ENST00000465591 SYNE4Q8N205 404 aa28.24■■■□□ 2.11
LIME1-203ENST00000465591 TSPYL6Q8N831 410 aa28.24■■■□□ 2.11
LIME1-203ENST00000465591 PLBD2Q8NHP8 589 aa28.24■■■□□ 2.11
LIME1-203ENST00000465591 ZNF428Q96B54 188 aa28.24■■■□□ 2.11
LIME1-203ENST00000465591 SOGA3Q5TF21 947 aa28.23■■■□□ 2.11
LIME1-203ENST00000465591 SLC51AQ86UW1 340 aa28.23■■■□□ 2.11
LIME1-203ENST00000465591 HYPKQ9NX55 129 aa28.23■■■□□ 2.11
LIME1-203ENST00000465591 KDM2BQ8NHM5 1336 aa28.22■■■□□ 2.11
LIME1-203ENST00000465591 ALDH1B1P30837 517 aa28.22■■■□□ 2.11
LIME1-203ENST00000465591 HOXA10P31260 410 aaPredicted RBP28.22■■■□□ 2.11
LIME1-203ENST00000465591 CCDC93Q567U6 631 aa28.22■■■□□ 2.11
LIME1-203ENST00000465591 SLC10A5Q5PT55 438 aa28.22■■■□□ 2.11
LIME1-203ENST00000465591 ANKRD13DQ6ZTN6 518 aa28.22■■■□□ 2.11
LIME1-203ENST00000465591 SNED1Q8TER0 1413 aa28.21■■■□□ 2.11
LIME1-203ENST00000465591 PHAXQ9H814 394 aaKnown RBP28.21■■■□□ 2.11
LIME1-203ENST00000465591 RRAGCQ9HB90 399 aa28.21■■■□□ 2.11
LIME1-203ENST00000465591 RPGRQ92834 1020 aaKnown RBP28.2■■■□□ 2.1
LIME1-203ENST00000465591 SALL2Q9Y467 1007 aaPredicted RBP28.2■■■□□ 2.1
LIME1-203ENST00000465591 GLTPD2A6NH11 291 aa28.19■■■□□ 2.1
LIME1-203ENST00000465591 ISCA1Q9BUE6 129 aa28.19■■■□□ 2.1
LIME1-203ENST00000465591 HCLS1P14317 486 aaPredicted RBP28.18■■■□□ 2.1
LIME1-203ENST00000465591 NCBP3Q53F19 620 aaKnown RBP28.18■■■□□ 2.1
LIME1-203ENST00000465591 DDX60Q8IY21 1712 aaKnown RBP28.18■■■□□ 2.1
LIME1-203ENST00000465591 RNF123Q5XPI4 1314 aa28.18■■■□□ 2.1
LIME1-203ENST00000465591 ATP5J2-PTCD1G3V325 749 aa28.17■■■□□ 2.1
LIME1-203ENST00000465591 TOMM70O94826 608 aa28.17■■■□□ 2.1
LIME1-203ENST00000465591 FKBP4Q02790 459 aaKnown RBP eCLIP28.17■■■□□ 2.1
LIME1-203ENST00000465591 NLRP3Q96P20 1036 aa28.17■■■□□ 2.1
LIME1-203ENST00000465591 TRMT112Q9UI30 125 aaKnown RBP28.17■■■□□ 2.1
LIME1-203ENST00000465591 TAF1P21675 1872 aa28.17■■■□□ 2.1
LIME1-203ENST00000465591 FAM9BQ8IZU0 186 aa28.16■■■□□ 2.1
LIME1-203ENST00000465591 CRAMP1Q96RY5 1269 aa28.16■■■□□ 2.1
LIME1-203ENST00000465591 ZNF277Q9NRM2 450 aaPredicted RBP28.16■■■□□ 2.1
LIME1-203ENST00000465591 IL16Q14005 1332 aa28.16■■■□□ 2.1
LIME1-203ENST00000465591 RBM17Q96I25 401 aaKnown RBP28.15■■■□□ 2.1
LIME1-203ENST00000465591 SH3TC1Q8TE82 1336 aa28.15■■■□□ 2.1
LIME1-203ENST00000465591 RTKN2Q8IZC4 609 aa28.14■■■□□ 2.1
LIME1-203ENST00000465591 WDR90Q96KV7 1748 aa28.13■■■□□ 2.09
LIME1-203ENST00000465591 TCERG1O14776 1098 aaKnown RBP28.13■■■□□ 2.09
LIME1-203ENST00000465591 CCDC30Q5VVM6 783 aa28.13■■■□□ 2.09
LIME1-203ENST00000465591 POTECB2RU33 542 aa28.12■■■□□ 2.09
LIME1-203ENST00000465591 RIC3Q7Z5B4 369 aa28.12■■■□□ 2.09
LIME1-203ENST00000465591 ABCC4O15439 1325 aa28.12■■■□□ 2.09
LIME1-203ENST00000465591 PPEF1O14829 653 aaPredicted RBP28.11■■■□□ 2.09
LIME1-203ENST00000465591 HSPA6P17066 643 aa28.11■■■□□ 2.09
LIME1-203ENST00000465591 GOLGA2Q08379 1002 aa28.11■■■□□ 2.09
LIME1-203ENST00000465591 FAM89AQ96GI7 184 aa28.11■■■□□ 2.09
LIME1-203ENST00000465591 FANCIQ9NVI1 1328 aa28.11■■■□□ 2.09
LIME1-203ENST00000465591 TRIM28Q13263 835 aaKnown RBP28.1■■■□□ 2.09
LIME1-203ENST00000465591 TWISTNBQ3B726 338 aaPredicted RBP28.1■■■□□ 2.09
LIME1-203ENST00000465591 RBM46Q8TBY0 533 aaKnown RBP28.1■■■□□ 2.09
LIME1-203ENST00000465591 COL4A5P29400 1685 aa28.1■■■□□ 2.09
LIME1-203ENST00000465591 CEP350Q5VT06 3117 aa28.09■■■□□ 2.09
LIME1-203ENST00000465591 RTL5Q5HYW3 569 aaPredicted RBP28.09■■■□□ 2.09
LIME1-203ENST00000465591 SPINK5Q9NQ38 1064 aaPredicted RBP28.09■■■□□ 2.09
LIME1-203ENST00000465591 DDNO94850 711 aaPredicted RBP28.08■■■□□ 2.09
LIME1-203ENST00000465591 CC2D2BQ6DHV5 1058 aa28.08■■■□□ 2.09
LIME1-203ENST00000465591 DPY19L2Q6NUT2 758 aa28.08■■■□□ 2.09
LIME1-203ENST00000465591 WDR63Q8IWG1 891 aa28.08■■■□□ 2.09
LIME1-203ENST00000465591 C16orf71Q8IYS4 520 aaPredicted RBP28.08■■■□□ 2.09
LIME1-203ENST00000465591 PSMD1Q99460 953 aa28.08■■■□□ 2.09
LIME1-203ENST00000465591 MYD88Q99836 296 aa28.08■■■□□ 2.09
LIME1-203ENST00000465591 COL4A1P02462 1669 aa28.07■■■□□ 2.08
LIME1-203ENST00000465591 VEGFAP15692 232 aaPredicted RBP28.07■■■□□ 2.08
LIME1-203ENST00000465591 IARSP41252 1262 aaKnown RBP28.07■■■□□ 2.08
LIME1-203ENST00000465591 G2E3Q7L622 706 aa28.06■■■□□ 2.08
LIME1-203ENST00000465591 ZNF541Q9H0D2 1346 aa28.06■■■□□ 2.08
LIME1-203ENST00000465591 ATP6V0A2Q9Y487 856 aa28.05■■■□□ 2.08
LIME1-203ENST00000465591 METTL22Q9BUU2 404 aaPredicted RBP28.04■■■□□ 2.08
LIME1-203ENST00000465591 CHMP4AQ9BY43 222 aa28.04■■■□□ 2.08
LIME1-203ENST00000465591 MAP3K2Q9Y2U5 619 aa28.03■■■□□ 2.08
LIME1-203ENST00000465591 IRS4O14654 1257 aaPredicted RBP28.02■■■□□ 2.08
LIME1-203ENST00000465591 EXOSC9Q06265 439 aaKnown RBP28.02■■■□□ 2.08
LIME1-203ENST00000465591 DDX46Q7L014 1031 aaKnown RBP28.02■■■□□ 2.08
LIME1-203ENST00000465591 STK31Q9BXU1 1019 aa28.02■■■□□ 2.08
LIME1-203ENST00000465591 CACNA1FO60840 1977 aa28.02■■■□□ 2.08
LIME1-203ENST00000465591 PI4KAP2A4QPH2 592 aa28.01■■■□□ 2.07
LIME1-203ENST00000465591 VAMP4O75379 141 aa28.01■■■□□ 2.07
LIME1-203ENST00000465591 BBOX1O75936 387 aa28.01■■■□□ 2.07
LIME1-203ENST00000465591 DDX58O95786 925 aaKnown RBP28.01■■■□□ 2.07
LIME1-203ENST00000465591 GRAPQ13588 217 aa28.01■■■□□ 2.07
LIME1-203ENST00000465591 SF3B3Q15393 1217 aaKnown RBP28.01■■■□□ 2.07
LIME1-203ENST00000465591 KSR2Q6VAB6 950 aa28.01■■■□□ 2.07
LIME1-203ENST00000465591 PI4KAP1Q8N8J0 262 aa28.01■■■□□ 2.07
LIME1-203ENST00000465591 ZBTB38Q8NAP3 1195 aaPredicted RBP28.01■■■□□ 2.07
LIME1-203ENST00000465591 GRAPLQ8TC17 118 aaPredicted RBP28.01■■■□□ 2.07
LIME1-203ENST00000465591 JARID2Q92833 1246 aaPredicted RBP28.01■■■□□ 2.07
LIME1-203ENST00000465591 FZD9O00144 591 aa28■■■□□ 2.07
LIME1-203ENST00000465591 SLC4A2P04920 1241 aa28■■■□□ 2.07
LIME1-203ENST00000465591 CCDC191Q8NCU4 936 aa28■■■□□ 2.07
LIME1-203ENST00000465591 LRRC37AA6NMS7 1700 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms