RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	GPR162	Q16538	588 aa		13.61	□□□□□ -0.23
UBR4-208	ENST00000459947	LAMB2	P55268	1798 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	ALDH1L1	O75891	902 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	ALDH1B1	P30837	517 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	DALRD3	Q5D0E6	543 aa	Known RBP	13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	TRMT112	Q9UI30	125 aa	Known RBP	13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	MAP3K2	Q9Y2U5	619 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	SENP3-EIF4A1	A0A087X0R7	540 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	GPT	P24298	496 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	CC2D2B	Q6DHV5	1058 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	TMC4	Q7Z404	712 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	LINS1	Q8NG48	757 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	NLRP3	Q96P20	1036 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	PHAX	Q9H814	394 aa	Known RBP	13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	ARFGEF1	Q9Y6D6	1849 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	DPEP1	P16444	411 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	MRPL50	Q8N5N7	158 aa	Known RBP	13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	SMC4	Q9NTJ3	1288 aa		13.6	□□□□□ -0.23
UBR4-208	ENST00000459947	PCCA	P05165	728 aa	Predicted RBP	13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	MYD88	Q99836	296 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	CDHR2	Q9BYE9	1310 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	UBN2	Q6ZU65	1347 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	SUSD4	Q5VX71	490 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	TTLL6	Q8N841	843 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	CDCA7L	Q96GN5	454 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	ANKRD31	Q8N7Z5	1873 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	PI4KAP2	A4QPH2	592 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	PI4KAP1	Q8N8J0	262 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	ARHGAP45	Q92619	1136 aa		13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	RBM17	Q96I25	401 aa	Known RBP	13.59	□□□□□ -0.23
UBR4-208	ENST00000459947	ADCY9	O60503	1353 aa		13.58	□□□□□ -0.23
UBR4-208	ENST00000459947	NLGN2	Q8NFZ4	835 aa		13.58	□□□□□ -0.24
UBR4-208	ENST00000459947	RPGR	Q92834	1020 aa	Known RBP	13.58	□□□□□ -0.24
UBR4-208	ENST00000459947	TMX4	Q9H1E5	349 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-208	ENST00000459947	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-208	ENST00000459947	BRCA1	P38398	1863 aa	Known RBP	13.58	□□□□□ -0.24
UBR4-208	ENST00000459947	MS4A1	P11836	297 aa		13.58	□□□□□ -0.24
UBR4-208	ENST00000459947	CRAMP1	Q96RY5	1269 aa		13.57	□□□□□ -0.24
UBR4-208	ENST00000459947	HOXA10	P31260	410 aa	Predicted RBP	13.57	□□□□□ -0.24
UBR4-208	ENST00000459947	CRY2	Q49AN0	593 aa		13.56	□□□□□ -0.24
UBR4-208	ENST00000459947	SSH1	Q8WYL5	1049 aa		13.56	□□□□□ -0.24
UBR4-208	ENST00000459947	N4BP2	Q86UW6	1770 aa	Predicted RBP	13.56	□□□□□ -0.24
UBR4-208	ENST00000459947	ERFE	Q4G0M1	354 aa		13.56	□□□□□ -0.24
UBR4-208	ENST00000459947	SRGN	P10124	158 aa		13.56	□□□□□ -0.24
UBR4-208	ENST00000459947	G2E3	Q7L622	706 aa		13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	SRCIN1	Q9C0H9	1055 aa		13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	CCT4	P50991	539 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	ABCC12	Q96J65	1359 aa		13.55	□□□□□ -0.24
UBR4-208	ENST00000459947		A0A0G2JLW4	131 aa		13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	NEURL1B	A8MQ27	555 aa		13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	RARS	P54136	660 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	PELP1	Q8IZL8	1130 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	BCS1L	Q9Y276	419 aa		13.55	□□□□□ -0.24
UBR4-208	ENST00000459947	FAM177B	A6PVY3	158 aa		13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	PDE8A	O60658	829 aa		13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	SF3B3	Q15393	1217 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	TCERG1	O14776	1098 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	DDX46	Q7L014	1031 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	COL11A2	P13942	1736 aa	Predicted RBP	13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	ATP5J2-PTCD1	G3V325	749 aa		13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	IRS4	O14654	1257 aa	Predicted RBP	13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	PLA2G12B	Q9BX93	195 aa		13.54	□□□□□ -0.24
UBR4-208	ENST00000459947	CCDC152	Q4G0S7	254 aa		13.53	□□□□□ -0.24
UBR4-208	ENST00000459947	RTL9	Q8NET4	1388 aa		13.53	□□□□□ -0.24
UBR4-208	ENST00000459947	BBOX1	O75936	387 aa		13.53	□□□□□ -0.24
UBR4-208	ENST00000459947	KCNA3	P22001	575 aa		13.53	□□□□□ -0.24
UBR4-208	ENST00000459947	GCKR	Q14397	625 aa		13.53	□□□□□ -0.24
UBR4-208	ENST00000459947	LTBP3	Q9NS15	1303 aa		13.53	□□□□□ -0.24
UBR4-208	ENST00000459947	CHRNA5	P30532	468 aa		13.52	□□□□□ -0.24
UBR4-208	ENST00000459947	NUTM1	Q86Y26	1132 aa		13.52	□□□□□ -0.24
UBR4-208	ENST00000459947		H7C1W4	665 aa		13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	CCDC93	Q567U6	631 aa		13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	BEND3	Q5T5X7	828 aa		13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	RTKN2	Q8IZC4	609 aa		13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	CHD4	Q14839	1912 aa		13.52	□□□□□ -0.25
UBR4-208	ENST00000459947	DDX60	Q8IY21	1712 aa	Known RBP	13.51	□□□□□ -0.25
UBR4-208	ENST00000459947	IGKV5-2	P06315	115 aa		13.51	□□□□□ -0.25
UBR4-208	ENST00000459947	SUPT20H	Q8NEM7	779 aa		13.51	□□□□□ -0.25
UBR4-208	ENST00000459947	CHMP4B	Q9H444	224 aa	Known RBP	13.51	□□□□□ -0.25
UBR4-208	ENST00000459947	ZKSCAN2	Q63HK3	967 aa		13.51	□□□□□ -0.25
UBR4-208	ENST00000459947	CDC5L	Q99459	802 aa	Known RBP	13.51	□□□□□ -0.25
UBR4-208	ENST00000459947	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.51	□□□□□ -0.25
UBR4-208	ENST00000459947	PRPF40B	Q6NWY9	871 aa	Known RBP	13.5	□□□□□ -0.25
UBR4-208	ENST00000459947	VPS33B	Q9H267	617 aa		13.5	□□□□□ -0.25
UBR4-208	ENST00000459947	GRM8	O00222	908 aa		13.5	□□□□□ -0.25
UBR4-208	ENST00000459947	GRAP	Q13588	217 aa		13.5	□□□□□ -0.25
UBR4-208	ENST00000459947	GRAPL	Q8TC17	118 aa	Predicted RBP	13.5	□□□□□ -0.25
UBR4-208	ENST00000459947	MYH3	P11055	1940 aa		13.5	□□□□□ -0.25
UBR4-208	ENST00000459947	SLC4A10	Q6U841	1118 aa		13.49	□□□□□ -0.25
UBR4-208	ENST00000459947	FAM89A	Q96GI7	184 aa		13.49	□□□□□ -0.25
UBR4-208	ENST00000459947	UTY	O14607	1347 aa		13.49	□□□□□ -0.25
UBR4-208	ENST00000459947	YBX3	P16989	372 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
UBR4-208	ENST00000459947	PPEF1	O14829	653 aa	Predicted RBP	13.48	□□□□□ -0.25
UBR4-208	ENST00000459947	CTSW	P56202	376 aa		13.48	□□□□□ -0.25
UBR4-208	ENST00000459947	ARHGAP27	Q6ZUM4	889 aa		13.48	□□□□□ -0.25
UBR4-208	ENST00000459947	NOB1	Q9ULX3	412 aa	Known RBP	13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms