RNA–Protein interactions for RNA: ENST00000439669.5

CPNE1-217, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 784 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-217ENST00000439669 RNF181Q9P0P0 153 aa30.97■■■□□ 2.55
CPNE1-217ENST00000439669 RIC1Q4ADV7 1423 aa30.96■■■□□ 2.55
CPNE1-217ENST00000439669 SLX4Q8IY92 1834 aa30.96■■■□□ 2.55
CPNE1-217ENST00000439669 ARFGEF2Q9Y6D5 1785 aa30.94■■■□□ 2.54
CPNE1-217ENST00000439669 RIC3Q7Z5B4 369 aa30.94■■■□□ 2.54
CPNE1-217ENST00000439669 STK31Q9BXU1 1019 aa30.94■■■□□ 2.54
CPNE1-217ENST00000439669 GPBP1L1Q9HC44 474 aaPredicted RBP30.94■■■□□ 2.54
CPNE1-217ENST00000439669 CCER2I3L3R5 266 aa30.93■■■□□ 2.54
CPNE1-217ENST00000439669 TCERG1O14776 1098 aaKnown RBP30.93■■■□□ 2.54
CPNE1-217ENST00000439669 CRY2Q49AN0 593 aa30.93■■■□□ 2.54
CPNE1-217ENST00000439669 RPGRQ92834 1020 aaKnown RBP30.93■■■□□ 2.54
CPNE1-217ENST00000439669 RNF123Q5XPI4 1314 aa30.93■■■□□ 2.54
CPNE1-217ENST00000439669 NFKBIEO00221 500 aa30.92■■■□□ 2.54
CPNE1-217ENST00000439669 ZNF428Q96B54 188 aa30.92■■■□□ 2.54
CPNE1-217ENST00000439669 TRMT112Q9UI30 125 aaKnown RBP30.92■■■□□ 2.54
CPNE1-217ENST00000439669 ATP5J2-PTCD1G3V325 749 aa30.91■■■□□ 2.54
CPNE1-217ENST00000439669 SOGA3Q5TF21 947 aa30.91■■■□□ 2.54
CPNE1-217ENST00000439669 MYH16Q9H6N6 1097 aa30.91■■■□□ 2.54
CPNE1-217ENST00000439669 LMNB1P20700 586 aa30.9■■■□□ 2.54
CPNE1-217ENST00000439669 ALDH1B1P30837 517 aa30.9■■■□□ 2.54
CPNE1-217ENST00000439669 NLRP3Q96P20 1036 aa30.9■■■□□ 2.54
CPNE1-217ENST00000439669 ISCA1Q9BUE6 129 aa30.9■■■□□ 2.54
CPNE1-217ENST00000439669 SPINK5Q9NQ38 1064 aaPredicted RBP30.9■■■□□ 2.54
CPNE1-217ENST00000439669 SBF1O95248 1867 aa30.9■■■□□ 2.54
CPNE1-217ENST00000439669 SH3TC1Q8TE82 1336 aa30.9■■■□□ 2.54
CPNE1-217ENST00000439669 DDX58O95786 925 aaKnown RBP30.89■■■□□ 2.54
CPNE1-217ENST00000439669 EXOSC9Q06265 439 aaKnown RBP30.88■■■□□ 2.53
CPNE1-217ENST00000439669 SLC10A5Q5PT55 438 aa30.88■■■□□ 2.53
CPNE1-217ENST00000439669 C3orf67Q6ZVT6 689 aa30.88■■■□□ 2.53
CPNE1-217ENST00000439669 CCDC93Q567U6 631 aa30.87■■■□□ 2.53
CPNE1-217ENST00000439669 TAOK3Q9H2K8 898 aa30.87■■■□□ 2.53
CPNE1-217ENST00000439669 HCLS1P14317 486 aaPredicted RBP30.86■■■□□ 2.53
CPNE1-217ENST00000439669 SYNE4Q8N205 404 aa30.86■■■□□ 2.53
CPNE1-217ENST00000439669 C7orf43Q8WVR3 580 aa30.86■■■□□ 2.53
CPNE1-217ENST00000439669 RBM17Q96I25 401 aaKnown RBP30.86■■■□□ 2.53
CPNE1-217ENST00000439669 FER1L6Q2WGJ9 1857 aa30.86■■■□□ 2.53
CPNE1-217ENST00000439669 PRELPP51888 382 aa30.85■■■□□ 2.53
CPNE1-217ENST00000439669 MYD88Q99836 296 aa30.85■■■□□ 2.53
CPNE1-217ENST00000439669 ZNF521Q96K83 1311 aa30.84■■■□□ 2.53
CPNE1-217ENST00000439669 HOXA10P31260 410 aaPredicted RBP30.84■■■□□ 2.53
CPNE1-217ENST00000439669 LTBP3Q9NS15 1303 aa30.83■■■□□ 2.53
CPNE1-217ENST00000439669 SLC4A2P04920 1241 aa30.83■■■□□ 2.53
CPNE1-217ENST00000439669 DIEXFQ68CQ4 756 aaKnown RBP30.83■■■□□ 2.53
CPNE1-217ENST00000439669 VAMP4O75379 141 aa30.82■■■□□ 2.52
CPNE1-217ENST00000439669 TRIM28Q13263 835 aaKnown RBP30.82■■■□□ 2.52
CPNE1-217ENST00000439669 OLFM4Q6UX06 510 aa30.82■■■□□ 2.52
CPNE1-217ENST00000439669 FAM89AQ96GI7 184 aa30.82■■■□□ 2.52
CPNE1-217ENST00000439669 CRAMP1Q96RY5 1269 aa30.82■■■□□ 2.52
CPNE1-217ENST00000439669 MAP3K2Q9Y2U5 619 aa30.82■■■□□ 2.52
CPNE1-217ENST00000439669 RTL5Q5HYW3 569 aaPredicted RBP30.81■■■□□ 2.52
CPNE1-217ENST00000439669 METTL22Q9BUU2 404 aaPredicted RBP30.81■■■□□ 2.52
CPNE1-217ENST00000439669 CCDC88AQ3V6T2 1871 aa30.8■■■□□ 2.52
CPNE1-217ENST00000439669 ZC3H4Q9UPT8 1303 aaKnown RBP30.8■■■□□ 2.52
CPNE1-217ENST00000439669 KSR2Q6VAB6 950 aa30.8■■■□□ 2.52
CPNE1-217ENST00000439669 G2E3Q7L622 706 aa30.8■■■□□ 2.52
CPNE1-217ENST00000439669 PI4KAP2A4QPH2 592 aa30.79■■■□□ 2.52
CPNE1-217ENST00000439669 PI4KAP1Q8N8J0 262 aa30.79■■■□□ 2.52
CPNE1-217ENST00000439669 LAMB2P55268 1798 aa30.79■■■□□ 2.52
CPNE1-217ENST00000439669 TIAM2Q8IVF5 1701 aa30.78■■■□□ 2.52
CPNE1-217ENST00000439669 PPEF1O14829 653 aaPredicted RBP30.78■■■□□ 2.52
CPNE1-217ENST00000439669 RTKN2Q8IZC4 609 aa30.78■■■□□ 2.52
CPNE1-217ENST00000439669 KDM2BQ8NHM5 1336 aa30.77■■■□□ 2.52
CPNE1-217ENST00000439669 FKBP4Q02790 459 aaKnown RBP eCLIP30.77■■■□□ 2.52
CPNE1-217ENST00000439669 FLIIQ13045 1269 aa30.77■■■□□ 2.52
CPNE1-217ENST00000439669 CCDC191Q8NCU4 936 aa30.77■■■□□ 2.52
CPNE1-217ENST00000439669 ABCC4O15439 1325 aa30.76■■■□□ 2.52
CPNE1-217ENST00000439669 DDX60Q8IY21 1712 aaKnown RBP30.76■■■□□ 2.52
CPNE1-217ENST00000439669 CWC25Q9NXE8 425 aaPredicted RBP30.76■■■□□ 2.51
CPNE1-217ENST00000439669 IRS4O14654 1257 aaPredicted RBP30.75■■■□□ 2.51
CPNE1-217ENST00000439669 C1QTNF8P60827 252 aa30.75■■■□□ 2.51
CPNE1-217ENST00000439669 NEXNQ0ZGT2 675 aa30.75■■■□□ 2.51
CPNE1-217ENST00000439669 CC2D2BQ6DHV5 1058 aa30.75■■■□□ 2.51
CPNE1-217ENST00000439669 DDX46Q7L014 1031 aaKnown RBP30.75■■■□□ 2.51
CPNE1-217ENST00000439669 ZBTB38Q8NAP3 1195 aaPredicted RBP30.75■■■□□ 2.51
CPNE1-217ENST00000439669 NMRK2Q9NPI5 230 aa30.75■■■□□ 2.51
CPNE1-217ENST00000439669 FKBP5Q13451 457 aaPredicted RBP30.74■■■□□ 2.51
CPNE1-217ENST00000439669 E9PSI1 815 aa30.73■■■□□ 2.51
CPNE1-217ENST00000439669 MIER1Q8N108 512 aa30.73■■■□□ 2.51
CPNE1-217ENST00000439669 TMX4Q9H1E5 349 aaPredicted RBP30.73■■■□□ 2.51
CPNE1-217ENST00000439669 ZNF277Q9NRM2 450 aaPredicted RBP30.73■■■□□ 2.51
CPNE1-217ENST00000439669 KIF3CO14782 793 aa30.72■■■□□ 2.51
CPNE1-217ENST00000439669 DICER1Q9UPY3 1922 aaKnown RBP30.72■■■□□ 2.51
CPNE1-217ENST00000439669 CACNA1FO60840 1977 aa30.72■■■□□ 2.51
CPNE1-217ENST00000439669 PCCAP05165 728 aaPredicted RBP30.71■■■□□ 2.51
CPNE1-217ENST00000439669 SLC51AQ86UW1 340 aa30.71■■■□□ 2.51
CPNE1-217ENST00000439669 IGKV5-2P06315 115 aa30.7■■■□□ 2.51
CPNE1-217ENST00000439669 HSP90B1P14625 803 aaKnown RBP30.7■■■□□ 2.51
CPNE1-217ENST00000439669 GRAPQ13588 217 aa30.7■■■□□ 2.51
CPNE1-217ENST00000439669 GRAPLQ8TC17 118 aaPredicted RBP30.7■■■□□ 2.51
CPNE1-217ENST00000439669 JARID2Q92833 1246 aaPredicted RBP30.7■■■□□ 2.51
CPNE1-217ENST00000439669 SNED1Q8TER0 1413 aa30.7■■■□□ 2.5
CPNE1-217ENST00000439669 SF3B3Q15393 1217 aaKnown RBP30.69■■■□□ 2.5
CPNE1-217ENST00000439669 ATP6V0A2Q9Y487 856 aa30.69■■■□□ 2.5
CPNE1-217ENST00000439669 GLTPD2A6NH11 291 aa30.68■■■□□ 2.5
CPNE1-217ENST00000439669 BBOX1O75936 387 aa30.68■■■□□ 2.5
CPNE1-217ENST00000439669 CWF19L2Q2TBE0 894 aaKnown RBP30.68■■■□□ 2.5
CPNE1-217ENST00000439669 GRIPAP1Q4V328 841 aa30.68■■■□□ 2.5
CPNE1-217ENST00000439669 DNAAF4Q8WXU2 420 aa30.68■■■□□ 2.5
CPNE1-217ENST00000439669 PSMD1Q99460 953 aa30.68■■■□□ 2.5
CPNE1-217ENST00000439669 SLFN5Q08AF3 891 aa30.67■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms