RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 STRN4Q9NRL3 753 aa22.4■■□□□ 1.18
CLK1-205ENST00000434813 WDR33Q9C0J8 1336 aaKnown RBP22.4■■□□□ 1.18
CLK1-205ENST00000434813 NASPP49321 788 aaPredicted RBP22.4■■□□□ 1.18
CLK1-205ENST00000434813 FOXD4L5Q5VV16 416 aaPredicted RBP22.4■■□□□ 1.18
CLK1-205ENST00000434813 ANKRD13DQ6ZTN6 518 aa22.4■■□□□ 1.18
CLK1-205ENST00000434813 FOXD4L4Q8WXT5 416 aaPredicted RBP22.4■■□□□ 1.18
CLK1-205ENST00000434813 CHAMP1Q96JM3 812 aa22.4■■□□□ 1.18
CLK1-205ENST00000434813 RPAP1Q9BWH6 1393 aaPredicted RBP22.39■■□□□ 1.17
CLK1-205ENST00000434813 AK2P54819 239 aa22.39■■□□□ 1.17
CLK1-205ENST00000434813 SNRKQ9NRH2 765 aa22.39■■□□□ 1.17
CLK1-205ENST00000434813 USP16Q9Y5T5 823 aa22.39■■□□□ 1.17
CLK1-205ENST00000434813 CCDC171Q6TFL3 1326 aa22.39■■□□□ 1.17
CLK1-205ENST00000434813 PTH1RQ03431 593 aa22.38■■□□□ 1.17
CLK1-205ENST00000434813 TM6SF1Q9BZW5 370 aa22.38■■□□□ 1.17
CLK1-205ENST00000434813 LIMCH1Q9UPQ0 1083 aa22.38■■□□□ 1.17
CLK1-205ENST00000434813 EPHA10Q5JZY3 1008 aa22.38■■□□□ 1.17
CLK1-205ENST00000434813 RUFY3Q7L099 469 aa22.38■■□□□ 1.17
CLK1-205ENST00000434813 CARD10Q9BWT7 1032 aa22.38■■□□□ 1.17
CLK1-205ENST00000434813 TLR7Q9NYK1 1049 aaKnown RBP22.38■■□□□ 1.17
CLK1-205ENST00000434813 CCDC173Q0VFZ6 552 aa22.37■■□□□ 1.17
CLK1-205ENST00000434813 SIL1Q9H173 461 aa22.37■■□□□ 1.17
CLK1-205ENST00000434813 COPRSQ9NQ92 184 aa22.37■■□□□ 1.17
CLK1-205ENST00000434813 CASTP20810 708 aaKnown RBP22.36■■□□□ 1.17
CLK1-205ENST00000434813 CCDC8Q9H0W5 538 aaPredicted RBP22.36■■□□□ 1.17
CLK1-205ENST00000434813 AHDC1Q5TGY3 1603 aaPredicted RBP22.36■■□□□ 1.17
CLK1-205ENST00000434813 UBR2Q8IWV8 1755 aa22.36■■□□□ 1.17
CLK1-205ENST00000434813 CABP4P57796 275 aa22.36■■□□□ 1.17
CLK1-205ENST00000434813 PCDH11XQ9BZA7 1347 aa22.36■■□□□ 1.17
CLK1-205ENST00000434813 PCDH11YQ9BZA8 1340 aa22.36■■□□□ 1.17
CLK1-205ENST00000434813 IL2RBP14784 551 aa22.35■■□□□ 1.17
CLK1-205ENST00000434813 NECTIN1Q15223 517 aa22.35■■□□□ 1.17
CLK1-205ENST00000434813 RABL6Q3YEC7 729 aaPredicted RBP22.35■■□□□ 1.17
CLK1-205ENST00000434813 VPS53Q5VIR6 699 aa22.35■■□□□ 1.17
CLK1-205ENST00000434813 PRPF40BQ6NWY9 871 aaKnown RBP22.35■■□□□ 1.17
CLK1-205ENST00000434813 PPP1R9BQ96SB3 815 aa22.35■■□□□ 1.17
CLK1-205ENST00000434813 TMEM63CQ9P1W3 806 aa22.35■■□□□ 1.17
CLK1-205ENST00000434813 NMIQ13287 307 aaPredicted RBP22.35■■□□□ 1.17
CLK1-205ENST00000434813 KLHDC4Q8TBB5 520 aa22.35■■□□□ 1.17
CLK1-205ENST00000434813 ZCRB1Q8TBF4 217 aaKnown RBP22.35■■□□□ 1.17
CLK1-205ENST00000434813 ZSWIM6Q9HCJ5 1215 aa22.35■■□□□ 1.17
CLK1-205ENST00000434813 RBM27Q9P2N5 1060 aaKnown RBP22.35■■□□□ 1.17
CLK1-205ENST00000434813 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.35■■□□□ 1.17
CLK1-205ENST00000434813 ERBB4Q15303 1308 aa22.34■■□□□ 1.17
CLK1-205ENST00000434813 PAPPAQ13219 1627 aa22.34■■□□□ 1.17
CLK1-205ENST00000434813 RFX5P48382 616 aaPredicted RBP22.34■■□□□ 1.17
CLK1-205ENST00000434813 MED23Q9ULK4 1368 aa22.34■■□□□ 1.17
CLK1-205ENST00000434813 CLCN1P35523 988 aa22.33■■□□□ 1.17
CLK1-205ENST00000434813 TRIM44Q96DX7 344 aaPredicted RBP22.33■■□□□ 1.17
CLK1-205ENST00000434813 JAKMIP1Q96N16 626 aaKnown RBP22.33■■□□□ 1.17
CLK1-205ENST00000434813 JCADQ9P266 1359 aa22.33■■□□□ 1.17
CLK1-205ENST00000434813 ANP32BQ92688 251 aaKnown RBP22.33■■□□□ 1.16
CLK1-205ENST00000434813 MAP4K1Q92918 833 aa22.33■■□□□ 1.16
CLK1-205ENST00000434813 FAM227BQ96M60 508 aa22.33■■□□□ 1.16
CLK1-205ENST00000434813 BTG4Q9NY30 223 aa22.33■■□□□ 1.16
CLK1-205ENST00000434813 NSFL1CQ9UNZ2 370 aaKnown RBP22.33■■□□□ 1.16
CLK1-205ENST00000434813 ZKSCAN1P17029 563 aaPredicted RBP22.32■■□□□ 1.16
CLK1-205ENST00000434813 PIP4K2AP48426 406 aaPredicted RBP22.32■■□□□ 1.16
CLK1-205ENST00000434813 ADCK5Q3MIX3 580 aa22.32■■□□□ 1.16
CLK1-205ENST00000434813 PLBD2Q8NHP8 589 aa22.32■■□□□ 1.16
CLK1-205ENST00000434813 FSD1Q9BTV5 496 aa22.32■■□□□ 1.16
CLK1-205ENST00000434813 PDRG1Q9NUG6 133 aa22.32■■□□□ 1.16
CLK1-205ENST00000434813 RBM8AQ9Y5S9 174 aaKnown RBP22.32■■□□□ 1.16
CLK1-205ENST00000434813 CYP46A1Q9Y6A2 500 aa22.32■■□□□ 1.16
CLK1-205ENST00000434813 NUP188Q5SRE5 1749 aa22.32■■□□□ 1.16
CLK1-205ENST00000434813 HSPA1LP34931 641 aa22.31■■□□□ 1.16
CLK1-205ENST00000434813 PTPN12Q05209 780 aaKnown RBP22.31■■□□□ 1.16
CLK1-205ENST00000434813 BOLA2Q9H3K6 86 aa22.31■■□□□ 1.16
CLK1-205ENST00000434813 RFX7Q2KHR2 1363 aa22.31■■□□□ 1.16
CLK1-205ENST00000434813 CPA1P15085 419 aa22.31■■□□□ 1.16
CLK1-205ENST00000434813 CREB3L3Q68CJ9 461 aa22.31■■□□□ 1.16
CLK1-205ENST00000434813 LRSAM1Q6UWE0 723 aa22.31■■□□□ 1.16
CLK1-205ENST00000434813 UBE3BQ7Z3V4 1068 aa22.31■■□□□ 1.16
CLK1-205ENST00000434813 ZSCAN31Q96LW9 406 aaPredicted RBP22.31■■□□□ 1.16
CLK1-205ENST00000434813 SH2B1Q9NRF2 756 aaPredicted RBP22.31■■□□□ 1.16
CLK1-205ENST00000434813 A0A0D9SFI3 127 aa22.3■■□□□ 1.16
CLK1-205ENST00000434813 ESPNB1AK53 854 aa22.3■■□□□ 1.16
CLK1-205ENST00000434813 PRIM1P49642 420 aaKnown RBP22.3■■□□□ 1.16
CLK1-205ENST00000434813 CASP7P55210 303 aa22.3■■□□□ 1.16
CLK1-205ENST00000434813 TMEM87AQ8NBN3 555 aa22.3■■□□□ 1.16
CLK1-205ENST00000434813 LARGE1O95461 756 aa22.3■■□□□ 1.16
CLK1-205ENST00000434813 RBSNQ9H1K0 784 aa22.3■■□□□ 1.16
CLK1-205ENST00000434813 KCPQ6ZWJ8 1503 aa22.29■■□□□ 1.16
CLK1-205ENST00000434813 ZSCAN22P10073 491 aaPredicted RBP22.29■■□□□ 1.16
CLK1-205ENST00000434813 TNNI3KQ59H18 835 aa22.29■■□□□ 1.16
CLK1-205ENST00000434813 SMC3Q9UQE7 1217 aa22.29■■□□□ 1.16
CLK1-205ENST00000434813 FPGT-TNNI3KV9GXZ4 949 aa22.29■■□□□ 1.16
CLK1-205ENST00000434813 TJP1Q07157 1748 aa22.29■■□□□ 1.16
CLK1-205ENST00000434813 STX6O43752 255 aa22.28■■□□□ 1.16
CLK1-205ENST00000434813 ATP5JP18859 108 aa22.28■■□□□ 1.16
CLK1-205ENST00000434813 DBNLQ9UJU6 430 aaKnown RBP22.28■■□□□ 1.16
CLK1-205ENST00000434813 A0A087WZG4 1122 aa22.28■■□□□ 1.16
CLK1-205ENST00000434813 SLC27A2O14975 620 aa22.28■■□□□ 1.16
CLK1-205ENST00000434813 SYT1P21579 422 aa22.28■■□□□ 1.16
CLK1-205ENST00000434813 KCNJ4P48050 445 aa22.28■■□□□ 1.16
CLK1-205ENST00000434813 SYAP1Q96A49 352 aaPredicted RBP22.28■■□□□ 1.16
CLK1-205ENST00000434813 SHANK3Q9BYB0 1731 aa22.27■■□□□ 1.16
CLK1-205ENST00000434813 SYCE3A1L190 88 aa22.27■■□□□ 1.16
CLK1-205ENST00000434813 COL22A1Q8NFW1 1626 aaPredicted RBP22.27■■□□□ 1.15
CLK1-205ENST00000434813 ATP5J2-PTCD1G3V325 749 aa22.26■■□□□ 1.15
CLK1-205ENST00000434813 PTCD1O75127 700 aaKnown RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms