RNA–Protein interactions for RNA: ENST00000426280.3

GPC1-204, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 636 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-204ENST00000426280 ANKRD13DQ6ZTN6 518 aa16.54■□□□□ 0.24
GPC1-204ENST00000426280 CACNA1SQ13698 1873 aa16.53■□□□□ 0.24
GPC1-204ENST00000426280 CALD1Q05682 793 aaKnown RBP16.53■□□□□ 0.24
GPC1-204ENST00000426280 SLC10A5Q5PT55 438 aa16.53■□□□□ 0.24
GPC1-204ENST00000426280 PLBD2Q8NHP8 589 aa16.53■□□□□ 0.24
GPC1-204ENST00000426280 ISCA1Q9BUE6 129 aa16.53■□□□□ 0.24
GPC1-204ENST00000426280 NYXQ9GZU5 481 aa16.53■□□□□ 0.24
GPC1-204ENST00000426280 HCLS1P14317 486 aaPredicted RBP16.52■□□□□ 0.24
GPC1-204ENST00000426280 LMNB1P20700 586 aa16.52■□□□□ 0.24
GPC1-204ENST00000426280 UTP14AQ9BVJ6 771 aaKnown RBP16.52■□□□□ 0.24
GPC1-204ENST00000426280 PARP10Q53GL7 1025 aa16.51■□□□□ 0.23
GPC1-204ENST00000426280 G2E3Q7L622 706 aa16.51■□□□□ 0.23
GPC1-204ENST00000426280 PPP1R42Q7Z4L9 355 aa16.51■□□□□ 0.23
GPC1-204ENST00000426280 MIER1Q8N108 512 aa16.51■□□□□ 0.23
GPC1-204ENST00000426280 HYPKQ9NX55 129 aa16.51■□□□□ 0.23
GPC1-204ENST00000426280 IBTKQ9P2D0 1353 aaPredicted RBP16.51■□□□□ 0.23
GPC1-204ENST00000426280 HOXA10P31260 410 aaPredicted RBP16.5■□□□□ 0.23
GPC1-204ENST00000426280 FER1L6Q2WGJ9 1857 aa16.5■□□□□ 0.23
GPC1-204ENST00000426280 CCDC88AQ3V6T2 1871 aa16.49■□□□□ 0.23
GPC1-204ENST00000426280 NCBP3Q53F19 620 aaKnown RBP16.49■□□□□ 0.23
GPC1-204ENST00000426280 JARID2Q92833 1246 aaPredicted RBP16.49■□□□□ 0.23
GPC1-204ENST00000426280 RRAGCQ9HB90 399 aa16.49■□□□□ 0.23
GPC1-204ENST00000426280 TRMT112Q9UI30 125 aaKnown RBP16.49■□□□□ 0.23
GPC1-204ENST00000426280 ANKRD36CQ5JPF3 1778 aa16.49■□□□□ 0.23
GPC1-204ENST00000426280 ARFGEF2Q9Y6D5 1785 aa16.49■□□□□ 0.23
GPC1-204ENST00000426280 IL16Q14005 1332 aa16.48■□□□□ 0.23
GPC1-204ENST00000426280 FANCIQ9NVI1 1328 aa16.48■□□□□ 0.23
GPC1-204ENST00000426280 SNED1Q8TER0 1413 aa16.48■□□□□ 0.23
GPC1-204ENST00000426280 POTECB2RU33 542 aa16.48■□□□□ 0.23
GPC1-204ENST00000426280 EXOSC9Q06265 439 aaKnown RBP16.48■□□□□ 0.23
GPC1-204ENST00000426280 HSP90AB3PQ58FF7 597 aa16.48■□□□□ 0.23
GPC1-204ENST00000426280 RTL5Q5HYW3 569 aaPredicted RBP16.48■□□□□ 0.23
GPC1-204ENST00000426280 WDR63Q8IWG1 891 aa16.48■□□□□ 0.23
GPC1-204ENST00000426280 FAM89AQ96GI7 184 aa16.48■□□□□ 0.23
GPC1-204ENST00000426280 RIC1Q4ADV7 1423 aa16.47■□□□□ 0.23
GPC1-204ENST00000426280 VAMP4O75379 141 aa16.47■□□□□ 0.23
GPC1-204ENST00000426280 ALDH1B1P30837 517 aa16.47■□□□□ 0.23
GPC1-204ENST00000426280 TWISTNBQ3B726 338 aaPredicted RBP16.47■□□□□ 0.23
GPC1-204ENST00000426280 RIC3Q7Z5B4 369 aa16.47■□□□□ 0.23
GPC1-204ENST00000426280 NLRP3Q96P20 1036 aa16.47■□□□□ 0.23
GPC1-204ENST00000426280 TAOK3Q9H2K8 898 aa16.47■□□□□ 0.23
GPC1-204ENST00000426280 COL4A1P02462 1669 aa16.46■□□□□ 0.23
GPC1-204ENST00000426280 LTBP3Q9NS15 1303 aa16.46■□□□□ 0.23
GPC1-204ENST00000426280 CCDC93Q567U6 631 aa16.46■□□□□ 0.23
GPC1-204ENST00000426280 CCDC30Q5VVM6 783 aa16.46■□□□□ 0.23
GPC1-204ENST00000426280 RPGRQ92834 1020 aaKnown RBP16.46■□□□□ 0.23
GPC1-204ENST00000426280 CRAMP1Q96RY5 1269 aa16.46■□□□□ 0.23
GPC1-204ENST00000426280 MYD88Q99836 296 aa16.46■□□□□ 0.23
GPC1-204ENST00000426280 ZNF277Q9NRM2 450 aaPredicted RBP16.46■□□□□ 0.23
GPC1-204ENST00000426280 SH3TC1Q8TE82 1336 aa16.45■□□□□ 0.22
GPC1-204ENST00000426280 ZNF521Q96K83 1311 aa16.45■□□□□ 0.22
GPC1-204ENST00000426280 LAMB2P55268 1798 aa16.44■□□□□ 0.22
GPC1-204ENST00000426280 GLTPD2A6NH11 291 aa16.44■□□□□ 0.22
GPC1-204ENST00000426280 SLC4A2P04920 1241 aa16.44■□□□□ 0.22
GPC1-204ENST00000426280 FKBP4Q02790 459 aaKnown RBP eCLIP16.44■□□□□ 0.22
GPC1-204ENST00000426280 TRIM28Q13263 835 aaKnown RBP16.44■□□□□ 0.22
GPC1-204ENST00000426280 RBM17Q96I25 401 aaKnown RBP16.44■□□□□ 0.22
GPC1-204ENST00000426280 MAP3K2Q9Y2U5 619 aa16.44■□□□□ 0.22
GPC1-204ENST00000426280 ABCC4O15439 1325 aa16.44■□□□□ 0.22
GPC1-204ENST00000426280 COL4A5P29400 1685 aa16.43■□□□□ 0.22
GPC1-204ENST00000426280 CCER2I3L3R5 266 aa16.43■□□□□ 0.22
GPC1-204ENST00000426280 DDNO94850 711 aaPredicted RBP16.43■□□□□ 0.22
GPC1-204ENST00000426280 IGKV5-2P06315 115 aa16.43■□□□□ 0.22
GPC1-204ENST00000426280 GOLGA2Q08379 1002 aa16.43■□□□□ 0.22
GPC1-204ENST00000426280 METTL22Q9BUU2 404 aaPredicted RBP16.43■□□□□ 0.22
GPC1-204ENST00000426280 TAF1P21675 1872 aa16.43■□□□□ 0.22
GPC1-204ENST00000426280 TIAM2Q8IVF5 1701 aa16.42■□□□□ 0.22
GPC1-204ENST00000426280 PI4KAP2A4QPH2 592 aa16.42■□□□□ 0.22
GPC1-204ENST00000426280 PPEF1O14829 653 aaPredicted RBP16.42■□□□□ 0.22
GPC1-204ENST00000426280 SOGA3Q5TF21 947 aa16.42■□□□□ 0.22
GPC1-204ENST00000426280 PI4KAP1Q8N8J0 262 aa16.42■□□□□ 0.22
GPC1-204ENST00000426280 DDX60Q8IY21 1712 aaKnown RBP16.42■□□□□ 0.22
GPC1-204ENST00000426280 KSR2Q6VAB6 950 aa16.41■□□□□ 0.22
GPC1-204ENST00000426280 RTKN2Q8IZC4 609 aa16.41■□□□□ 0.22
GPC1-204ENST00000426280 CELF1Q92879 486 aaKnown RBP16.41■□□□□ 0.22
GPC1-204ENST00000426280 RNF123Q5XPI4 1314 aa16.41■□□□□ 0.22
GPC1-204ENST00000426280 KDM2BQ8NHM5 1336 aa16.41■□□□□ 0.22
GPC1-204ENST00000426280 IRS4O14654 1257 aaPredicted RBP16.4■□□□□ 0.22
GPC1-204ENST00000426280 TOMM70O94826 608 aa16.4■□□□□ 0.22
GPC1-204ENST00000426280 SF3B3Q15393 1217 aaKnown RBP16.4■□□□□ 0.22
GPC1-204ENST00000426280 CWF19L2Q2TBE0 894 aaKnown RBP16.4■□□□□ 0.22
GPC1-204ENST00000426280 ATP6V0A2Q9Y487 856 aa16.4■□□□□ 0.22
GPC1-204ENST00000426280 ZNF541Q9H0D2 1346 aa16.4■□□□□ 0.22
GPC1-204ENST00000426280 DICER1Q9UPY3 1922 aaKnown RBP16.39■□□□□ 0.21
GPC1-204ENST00000426280 IARSP41252 1262 aaKnown RBP16.39■□□□□ 0.21
GPC1-204ENST00000426280 CDCA7LQ96GN5 454 aa16.39■□□□□ 0.21
GPC1-204ENST00000426280 PSMD1Q99460 953 aa16.39■□□□□ 0.21
GPC1-204ENST00000426280 SEC31BQ9NQW1 1179 aa16.39■□□□□ 0.21
GPC1-204ENST00000426280 ZC3H4Q9UPT8 1303 aaKnown RBP16.39■□□□□ 0.21
GPC1-204ENST00000426280 ZBTB38Q8NAP3 1195 aaPredicted RBP16.38■□□□□ 0.21
GPC1-204ENST00000426280 CCDC191Q8NCU4 936 aa16.38■□□□□ 0.21
GPC1-204ENST00000426280 CCDC85AQ96PX6 553 aaPredicted RBP16.38■□□□□ 0.21
GPC1-204ENST00000426280 STK31Q9BXU1 1019 aa16.38■□□□□ 0.21
GPC1-204ENST00000426280 PCCAP05165 728 aaPredicted RBP16.37■□□□□ 0.21
GPC1-204ENST00000426280 POTEIP0CG38 1075 aa16.37■□□□□ 0.21
GPC1-204ENST00000426280 POTEJP0CG39 1038 aa16.37■□□□□ 0.21
GPC1-204ENST00000426280 FLIIQ13045 1269 aa16.37■□□□□ 0.21
GPC1-204ENST00000426280 GRAPQ13588 217 aa16.37■□□□□ 0.21
GPC1-204ENST00000426280 DDX46Q7L014 1031 aaKnown RBP16.37■□□□□ 0.21
GPC1-204ENST00000426280 SP8Q8IXZ3 490 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms