RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 IQCA1LA6NCM1 817 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 DDNO94850 711 aaPredicted RBP15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 HOXB7P09629 217 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 GRIPAP1Q4V328 841 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 HSP90AB3PQ58FF7 597 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 OLFM4Q6UX06 510 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 PSMD1Q99460 953 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 ADAMTS8Q9UP79 889 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 TRIM35Q9UPQ4 493 aa15.09■□□□□ 0.01
SQSTM1-203ENST00000422245 ANXA1P04083 346 aa15.08■□□□□ 0
SQSTM1-203ENST00000422245 IARSP41252 1262 aaKnown RBP15.08■□□□□ 0
SQSTM1-203ENST00000422245 HTRA3P83110 453 aa15.08■□□□□ 0
SQSTM1-203ENST00000422245 RBM17Q96I25 401 aaKnown RBP15.08■□□□□ 0
SQSTM1-203ENST00000422245 CRAMP1Q96RY5 1269 aa15.08■□□□□ 0
SQSTM1-203ENST00000422245 UTP14AQ9BVJ6 771 aaKnown RBP15.08■□□□□ 0
SQSTM1-203ENST00000422245 DDX21Q9NR30 783 aaKnown RBP eCLIP15.08■□□□□ 0
SQSTM1-203ENST00000422245 XAGE3Q8WTP9 111 aa15.07■□□□□ 0
SQSTM1-203ENST00000422245 LAS1LQ9Y4W2 734 aaKnown RBP15.07■□□□□ 0
SQSTM1-203ENST00000422245 ZNF541Q9H0D2 1346 aa15.07■□□□□ 0
SQSTM1-203ENST00000422245 PPEF1O14829 653 aaPredicted RBP15.06■□□□□ 0
SQSTM1-203ENST00000422245 HDGFL1Q5TGJ6 251 aa15.06■□□□□ 0
SQSTM1-203ENST00000422245 CHADLQ6NUI6 762 aa15.06■□□□□ 0
SQSTM1-203ENST00000422245 COPS6Q7L5N1 327 aa15.06■□□□□ 0
SQSTM1-203ENST00000422245 SYNE4Q8N205 404 aa15.06■□□□□ 0
SQSTM1-203ENST00000422245 JMYQ8N9B5 988 aa15.06■□□□□ 0
SQSTM1-203ENST00000422245 NECTIN2Q92692 538 aa15.06■□□□□ 0
SQSTM1-203ENST00000422245 NLRP3Q96P20 1036 aa15.06■□□□□ 0
SQSTM1-203ENST00000422245 FZD9O00144 591 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 AIMP1Q12904 312 aaKnown RBP15.05■□□□□ -0
SQSTM1-203ENST00000422245 KRT24Q2M2I5 525 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 SLC10A5Q5PT55 438 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 IFFO2Q5TF58 517 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 C3orf67Q6ZVT6 689 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 JDP2Q8WYK2 163 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 CFAP44Q96MT7 982 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 CHPF2Q9P2E5 772 aa15.05■□□□□ -0
SQSTM1-203ENST00000422245 NLRP10Q86W26 655 aa15.04■□□□□ -0
SQSTM1-203ENST00000422245 LDHDQ86WU2 507 aa15.04■□□□□ -0
SQSTM1-203ENST00000422245 TAF1DQ9H5J8 278 aaPredicted RBP15.04■□□□□ -0
SQSTM1-203ENST00000422245 LAMB2P55268 1798 aa15.03■□□□□ -0
SQSTM1-203ENST00000422245 SH3TC1Q8TE82 1336 aa15.03■□□□□ -0
SQSTM1-203ENST00000422245 CALD1Q05682 793 aaKnown RBP15.03■□□□□ -0
SQSTM1-203ENST00000422245 TCIRG1Q13488 830 aa15.03■□□□□ -0
SQSTM1-203ENST00000422245 GPC2Q8N158 579 aa15.03■□□□□ -0
SQSTM1-203ENST00000422245 TMX4Q9H1E5 349 aaPredicted RBP15.03■□□□□ -0
SQSTM1-203ENST00000422245 DBF4Q9UBU7 674 aaPredicted RBP15.03■□□□□ -0
SQSTM1-203ENST00000422245 HACL1Q9UJ83 578 aa15.03■□□□□ -0
SQSTM1-203ENST00000422245 ABCC4O15439 1325 aa15.02■□□□□ -0
SQSTM1-203ENST00000422245 POTEIP0CG38 1075 aa15.02■□□□□ -0
SQSTM1-203ENST00000422245 POTEJP0CG39 1038 aa15.02■□□□□ -0
SQSTM1-203ENST00000422245 PLBD2Q8NHP8 589 aa15.02■□□□□ -0
SQSTM1-203ENST00000422245 MBIPQ9NS73 344 aa15.02■□□□□ -0
SQSTM1-203ENST00000422245 IFT57Q9NWB7 429 aa15.02■□□□□ -0
SQSTM1-203ENST00000422245 ADAMTSL1Q8N6G6 1762 aa15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 ZNF853P0CG23 659 aa15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 EIF6P56537 245 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 DUSP27Q5VZP5 1158 aa15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 LARGE2Q8N3Y3 721 aa15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 HYPKQ9NX55 129 aa15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 TRMT112Q9UI30 125 aaKnown RBP15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 ATP6V0A2Q9Y487 856 aa15.01□□□□□ -0.01
SQSTM1-203ENST00000422245 COL4A5P29400 1685 aa15□□□□□ -0.01
SQSTM1-203ENST00000422245 APAF1O14727 1248 aa15□□□□□ -0.01
SQSTM1-203ENST00000422245 HCLS1P14317 486 aaPredicted RBP15□□□□□ -0.01
SQSTM1-203ENST00000422245 EPHX2P34913 555 aa15□□□□□ -0.01
SQSTM1-203ENST00000422245 PNMA8AQ86V59 439 aaPredicted RBP15□□□□□ -0.01
SQSTM1-203ENST00000422245 CREBZFQ9NS37 354 aa15□□□□□ -0.01
SQSTM1-203ENST00000422245 TCERG1O14776 1098 aaKnown RBP14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 BBOX1O75936 387 aa14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 GNAI1P63096 354 aa14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 EAPPQ56P03 285 aaPredicted RBP14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 ANKRD13DQ6ZTN6 518 aa14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 DDX46Q7L014 1031 aaKnown RBP14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 NIM1KQ8IY84 436 aa14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 SUPT20HQ8NEM7 779 aa14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 VPS33BQ9H267 617 aa14.99□□□□□ -0.01
SQSTM1-203ENST00000422245 PASKQ96RG2 1323 aa14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 DDX60Q8IY21 1712 aaKnown RBP14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 PPIP5K2O43314 1243 aa14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 GRAPQ13588 217 aa14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 TMC4Q7Z404 712 aa14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 SLC51AQ86UW1 340 aa14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 GRAPLQ8TC17 118 aaPredicted RBP14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 ISCA1Q9BUE6 129 aa14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 RTFDC1Q9BY42 306 aaPredicted RBP14.98□□□□□ -0.01
SQSTM1-203ENST00000422245 LMOD1P29536 600 aaPredicted RBP14.97□□□□□ -0.01
SQSTM1-203ENST00000422245 GOLGA2Q08379 1002 aa14.97□□□□□ -0.01
SQSTM1-203ENST00000422245 DPP8Q6V1X1 898 aaPredicted RBP14.97□□□□□ -0.01
SQSTM1-203ENST00000422245 SP8Q8IXZ3 490 aa14.97□□□□□ -0.01
SQSTM1-203ENST00000422245 CHMP4AQ9BY43 222 aa14.97□□□□□ -0.01
SQSTM1-203ENST00000422245 GJA3Q9Y6H8 435 aa14.97□□□□□ -0.01
SQSTM1-203ENST00000422245 LRRC37AA6NMS7 1700 aa14.97□□□□□ -0.01
SQSTM1-203ENST00000422245 AOC3Q16853 763 aa14.96□□□□□ -0.01
SQSTM1-203ENST00000422245 CLEC11AQ9Y240 323 aa14.96□□□□□ -0.01
SQSTM1-203ENST00000422245 SCNN1DP51172 638 aa14.95□□□□□ -0.02
SQSTM1-203ENST00000422245 TRIM28Q13263 835 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-203ENST00000422245 MPNDQ8N594 471 aa14.95□□□□□ -0.02
SQSTM1-203ENST00000422245 LTBP1Q14766 1721 aa14.95□□□□□ -0.02
SQSTM1-203ENST00000422245 ATP5J2-PTCD1G3V325 749 aa14.94□□□□□ -0.02
SQSTM1-203ENST00000422245 ITGBL1O95965 494 aaPredicted RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms