RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 GAS2L3Q86XJ1 694 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 EVI5LQ96CN4 794 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 ZNF594Q96JF6 807 aaPredicted RBP13.2□□□□□ -0.3
DDX56-203ENST00000421223 BTG4Q9NY30 223 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 KDM3BQ7LBC6 1761 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 RAD50Q92878 1312 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 ANAPC15P60006 121 aa13.2□□□□□ -0.3
DDX56-203ENST00000421223 RBM27Q9P2N5 1060 aaKnown RBP13.2□□□□□ -0.3
DDX56-203ENST00000421223 MCM2P49736 904 aa13.19□□□□□ -0.3
DDX56-203ENST00000421223 AK2P54819 239 aa13.19□□□□□ -0.3
DDX56-203ENST00000421223 ADCK5Q3MIX3 580 aa13.19□□□□□ -0.3
DDX56-203ENST00000421223 PLBD2Q8NHP8 589 aa13.19□□□□□ -0.3
DDX56-203ENST00000421223 DBNDD2Q9BQY9 259 aa13.19□□□□□ -0.3
DDX56-203ENST00000421223 GRPEL1Q9HAV7 217 aa13.19□□□□□ -0.3
DDX56-203ENST00000421223 TMOD3Q9NYL9 352 aa13.19□□□□□ -0.3
DDX56-203ENST00000421223 FSD2A1L4K1 749 aa13.18□□□□□ -0.3
DDX56-203ENST00000421223 TIMM10P62072 90 aa13.18□□□□□ -0.3
DDX56-203ENST00000421223 ASAP1Q9ULH1 1129 aa13.18□□□□□ -0.3
DDX56-203ENST00000421223 A0A0D9SFI3 127 aa13.18□□□□□ -0.3
DDX56-203ENST00000421223 KDM4FA0A1W2PPD8 638 aa13.18□□□□□ -0.3
DDX56-203ENST00000421223 PTPN12Q05209 780 aaKnown RBP13.18□□□□□ -0.3
DDX56-203ENST00000421223 DDX46Q7L014 1031 aaKnown RBP13.18□□□□□ -0.3
DDX56-203ENST00000421223 KIF1AQ12756 1690 aa13.18□□□□□ -0.3
DDX56-203ENST00000421223 STRCP1A6NGW2 1772 aa13.18□□□□□ -0.3
DDX56-203ENST00000421223 RBM8AQ9Y5S9 174 aaKnown RBP13.18□□□□□ -0.3
DDX56-203ENST00000421223 ZKSCAN1P17029 563 aaPredicted RBP13.17□□□□□ -0.3
DDX56-203ENST00000421223 LRP10Q7Z4F1 713 aa13.17□□□□□ -0.3
DDX56-203ENST00000421223 CCDC83Q8IWF9 413 aa13.17□□□□□ -0.3
DDX56-203ENST00000421223 CWC25Q9NXE8 425 aaPredicted RBP13.17□□□□□ -0.3
DDX56-203ENST00000421223 DBNLQ9UJU6 430 aaKnown RBP13.17□□□□□ -0.3
DDX56-203ENST00000421223 OVOS2A0A0G2JMS6 1433 aa13.17□□□□□ -0.3
DDX56-203ENST00000421223 GPTP24298 496 aa13.17□□□□□ -0.3
DDX56-203ENST00000421223 SLFNL1Q499Z3 407 aa13.17□□□□□ -0.3
DDX56-203ENST00000421223 TNNI3KQ59H18 835 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 CCDC129Q6ZRS4 1044 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 DNAJC10Q8IXB1 793 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 NECAB1Q8N987 351 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 PDRG1Q9NUG6 133 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 FPGT-TNNI3KV9GXZ4 949 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 UTYO14607 1347 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 MRE11P49959 708 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 SEC62Q99442 399 aaKnown RBP13.16□□□□□ -0.3
DDX56-203ENST00000421223 CARD10Q9BWT7 1032 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 LMBRD1Q9NUN5 540 aa13.16□□□□□ -0.3
DDX56-203ENST00000421223 ADAMTS2O95450 1211 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 COL9A3Q14050 684 aaPredicted RBP13.15□□□□□ -0.3
DDX56-203ENST00000421223 FAM43AQ8N2R8 423 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 DCCP43146 1447 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 SOS2Q07890 1332 aaPredicted RBP13.15□□□□□ -0.3
DDX56-203ENST00000421223 ALS2Q96Q42 1657 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 CAMTA1Q9Y6Y1 1673 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 FAM177BA6PVY3 158 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 CYP2E1P05181 493 aaPredicted RBP13.15□□□□□ -0.3
DDX56-203ENST00000421223 STK3Q13188 491 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 RUFY3Q7L099 469 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 ZNF589Q86UQ0 364 aaPredicted RBP13.15□□□□□ -0.3
DDX56-203ENST00000421223 FAM89AQ96GI7 184 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 SMC3Q9UQE7 1217 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 CYP46A1Q9Y6A2 500 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 ERVV-2B6SEH9 535 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 LARGE1O95461 756 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 PTMSP20962 102 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 LRRC24Q50LG9 513 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 LIMCH1Q9UPQ0 1083 aa13.15□□□□□ -0.3
DDX56-203ENST00000421223 CCDC171Q6TFL3 1326 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 CPDO75976 1380 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 PHRF1Q9P1Y6 1649 aaKnown RBP13.14□□□□□ -0.31
DDX56-203ENST00000421223 KLHL40Q2TBA0 621 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 TAF7LQ5H9L4 462 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 CREB3L3Q68CJ9 461 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 SYNE4Q8N205 404 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 COPRSQ9NQ92 184 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 NSFL1CQ9UNZ2 370 aaKnown RBP13.14□□□□□ -0.31
DDX56-203ENST00000421223 TAF6LQ9Y6J9 622 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 GOLIM4O00461 696 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 GORABQ5T7V8 394 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 PUS3Q9BZE2 481 aaKnown RBP13.14□□□□□ -0.31
DDX56-203ENST00000421223 SNRKQ9NRH2 765 aa13.14□□□□□ -0.31
DDX56-203ENST00000421223 RFX5P48382 616 aaPredicted RBP13.13□□□□□ -0.31
DDX56-203ENST00000421223 CUL4AQ13619 759 aa13.13□□□□□ -0.31
DDX56-203ENST00000421223 PIGBQ92521 554 aa13.13□□□□□ -0.31
DDX56-203ENST00000421223 USP42Q9H9J4 1324 aaKnown RBP13.13□□□□□ -0.31
DDX56-203ENST00000421223 VPS37CA5D8V6 355 aaPredicted RBP13.13□□□□□ -0.31
DDX56-203ENST00000421223 GPT2Q8TD30 523 aa13.13□□□□□ -0.31
DDX56-203ENST00000421223 NAP1L2Q9ULW6 460 aaPredicted RBP13.13□□□□□ -0.31
DDX56-203ENST00000421223 NUTM2BA6NNL0 878 aaPredicted RBP13.12□□□□□ -0.31
DDX56-203ENST00000421223 NUTM2EB1AL46 878 aaPredicted RBP13.12□□□□□ -0.31
DDX56-203ENST00000421223 FGD1P98174 961 aa13.12□□□□□ -0.31
DDX56-203ENST00000421223 FKBP4Q02790 459 aaKnown RBP eCLIP13.12□□□□□ -0.31
DDX56-203ENST00000421223 NUTM2AQ8IVF1 878 aaPredicted RBP13.12□□□□□ -0.31
DDX56-203ENST00000421223 HIP1O00291 1037 aa13.12□□□□□ -0.31
DDX56-203ENST00000421223 BRD1O95696 1058 aa13.12□□□□□ -0.31
DDX56-203ENST00000421223 FOXO4P98177 505 aa13.12□□□□□ -0.31
DDX56-203ENST00000421223 SLC27A2O14975 620 aa13.11□□□□□ -0.31
DDX56-203ENST00000421223 CCDC57Q2TAC2 916 aa13.11□□□□□ -0.31
DDX56-203ENST00000421223 ZSCAN23Q3MJ62 389 aa13.11□□□□□ -0.31
DDX56-203ENST00000421223 LRRC2Q9BYS8 371 aa13.11□□□□□ -0.31
DDX56-203ENST00000421223 SYCE3A1L190 88 aa13.11□□□□□ -0.31
DDX56-203ENST00000421223 H7C1W4 665 aa13.11□□□□□ -0.31
DDX56-203ENST00000421223 PPFIA3O75145 1194 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms