RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 RASA3Q14644 834 aa6.93□□□□□ -1.3
VPS13A-207ENST00000419472 NUDT16Q96DE0 195 aaKnown RBP6.93□□□□□ -1.3
VPS13A-207ENST00000419472 C12orf49Q9H741 205 aa6.93□□□□□ -1.3
VPS13A-207ENST00000419472 S100BP04271 92 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-207ENST00000419472 ERVK-9P63128 1117 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 TAF1CQ15572 869 aaPredicted RBP6.92□□□□□ -1.3
VPS13A-207ENST00000419472 ERMP1Q7Z2K6 904 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 GPR152Q8TDT2 470 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 PMM1Q92871 262 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 PCGF6Q9BYE7 350 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 HPS5Q9UPZ3 1129 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 PPP4CP60510 307 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 DGKZQ13574 1117 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 HSP90AB2PQ58FF8 381 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 FMNL3Q8IVF7 1028 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 C1QTNF2Q9BXJ5 285 aa6.92□□□□□ -1.3
VPS13A-207ENST00000419472 PLEKHG4Q58EX7 1191 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 RASGRP4Q8TDF6 673 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 SH3TC2Q8TF17 1288 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.91□□□□□ -1.32e-8■■■■■ 167.7
VPS13A-207ENST00000419472 WASLO00401 505 aaPredicted RBP6.91□□□□□ -1.3
VPS13A-207ENST00000419472 U2SURPO15042 1029 aaKnown RBP6.91□□□□□ -1.3
VPS13A-207ENST00000419472 MRPL50Q8N5N7 158 aaKnown RBP6.91□□□□□ -1.3
VPS13A-207ENST00000419472 JDP2Q8WYK2 163 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 MYO19Q96H55 970 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 EFR3BQ9Y2G0 817 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 WDR97A6NE52 1622 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 USP17L7P0C7H9 530 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 NOS2P35228 1153 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 USP5P45974 858 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 DEPDC7Q96QD5 511 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 TRIM55Q9BYV6 548 aa6.91□□□□□ -1.3
VPS13A-207ENST00000419472 DNMBPQ6XZF7 1577 aa6.9□□□□□ -1.3
VPS13A-207ENST00000419472 A6NJY4 79 aa6.9□□□□□ -1.3
VPS13A-207ENST00000419472 KLF4O43474 513 aa6.9□□□□□ -1.3
VPS13A-207ENST00000419472 ILDR2Q71H61 639 aa6.9□□□□□ -1.3
VPS13A-207ENST00000419472 SLC4A9Q96Q91 983 aa6.9□□□□□ -1.3
VPS13A-207ENST00000419472 TRIM56Q9BRZ2 755 aaKnown RBP6.9□□□□□ -1.3
VPS13A-207ENST00000419472 SPON2Q9BUD6 331 aa6.9□□□□□ -1.3
VPS13A-207ENST00000419472 ADAMTS1Q9UHI8 967 aa6.9□□□□□ -1.3
VPS13A-207ENST00000419472 FOXD3Q9UJU5 478 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-207ENST00000419472 POTEB2H3BUK9 544 aa6.9□□□□□ -1.31
VPS13A-207ENST00000419472 CHMP4BP1P59074 171 aa6.9□□□□□ -1.31
VPS13A-207ENST00000419472 NBPF6Q5VWK0 638 aa6.9□□□□□ -1.31
VPS13A-207ENST00000419472 LILRB2Q8N423 598 aa6.9□□□□□ -1.31
VPS13A-207ENST00000419472 NBPF4Q96M43 638 aa6.9□□□□□ -1.31
VPS13A-207ENST00000419472 PARP3Q9Y6F1 533 aa6.9□□□□□ -1.31
VPS13A-207ENST00000419472 URB2Q14146 1524 aaKnown RBP6.9□□□□□ -1.31
VPS13A-207ENST00000419472 ESYT3A0FGR9 886 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 CDC45O75419 566 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 PSMA6P60900 246 aaKnown RBP6.89□□□□□ -1.31
VPS13A-207ENST00000419472 RAB33AQ14088 237 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 VARS2Q5ST30 1063 aaKnown RBP6.89□□□□□ -1.31
VPS13A-207ENST00000419472 TICAM2Q86XR7 235 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 RAVER1Q8IY67 606 aaKnown RBP6.89□□□□□ -1.31
VPS13A-207ENST00000419472 HCN4Q9Y3Q4 1203 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 EVA1CP58658 441 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 NFX1Q12986 1120 aaKnown RBP6.89□□□□□ -1.31
VPS13A-207ENST00000419472 NXPE4Q6UWF7 544 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 CCDC146Q8IYE0 955 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 IER2Q9BTL4 223 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 ESF1Q9H501 851 aaKnown RBP6.89□□□□□ -1.31
VPS13A-207ENST00000419472 GINM1Q9NU53 330 aa6.89□□□□□ -1.31
VPS13A-207ENST00000419472 CPNE3O75131 537 aaKnown RBP6.88□□□□□ -1.31
VPS13A-207ENST00000419472 PDGFRBP09619 1106 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 SH3BP2P78314 561 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 SP7Q8TDD2 431 aaPredicted RBP6.88□□□□□ -1.31
VPS13A-207ENST00000419472 MKL1Q969V6 931 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 TBX4P57082 545 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 ALDH16A1Q8IZ83 802 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 MORC4Q8TE76 937 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 CCDC74AQ96AQ1 378 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 FRMD6Q96NE9 622 aa6.88□□□□□ -1.31
VPS13A-207ENST00000419472 TTF2Q9UNY4 1162 aaKnown RBP6.88□□□□□ -1.31
VPS13A-207ENST00000419472 IFT140Q96RY7 1462 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 MINDY4BA8MYZ0 360 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 GYS2P54840 703 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 NEUROD1Q13562 356 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 TRMT44Q8IYL2 757 aaKnown RBP6.87□□□□□ -1.31
VPS13A-207ENST00000419472 STAG2Q8N3U4 1231 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 EVI5LQ96CN4 794 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 IFT43Q96FT9 208 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 DNAJC7Q99615 494 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 SIRPGQ9P1W8 387 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 SMTNP53814 917 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 ODR4Q5SWX8 454 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 KIAA0825Q8IV33 1275 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 CELF2-AS1Q8N7Q2 184 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 ZNF784Q8NCA9 323 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-207ENST00000419472 ANAPC16Q96DE5 110 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 EAF1Q96JC9 268 aaPredicted RBP6.87□□□□□ -1.31
VPS13A-207ENST00000419472 SEC16BQ96JE7 1060 aa6.87□□□□□ -1.31
VPS13A-207ENST00000419472 THRAP3Q9Y2W1 955 aaKnown RBP6.87□□□□□ -1.31
VPS13A-207ENST00000419472 TOPBP1Q92547 1522 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 EML1O00423 815 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 MTFR1Q15390 333 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 TKFCQ3LXA3 575 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 TREML1Q86YW5 311 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 PGBD3Q8N328 593 aa6.86□□□□□ -1.31
VPS13A-207ENST00000419472 ZDHHC1Q8WTX9 485 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms