RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, human

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPRF-205	ENST00000414879	ATP5J2-PTCD1	G3V325	749 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	ATP2B3	Q16720	1220 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	MEIS3	Q99687	375 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	ANKRD2	Q9GZV1	360 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	CNNM2	Q9H8M5	875 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	CCDC173	Q0VFZ6	552 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	RAB34	Q9BZG1	259 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	MTMR7	Q9Y216	660 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	RTCB	Q9Y3I0	505 aa	Known RBP	14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	ERBB4	Q15303	1308 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	CRNKL1	Q9BZJ0	848 aa	Known RBP	14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	EHMT1	Q9H9B1	1298 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	ERVV-2	B6SEH9	535 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	SMC2	O95347	1197 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	GNAT2	P19087	354 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	DZIP3	Q86Y13	1208 aa	Known RBP	14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	PHACTR3	Q96KR7	559 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	SLC12A7	Q9Y666	1083 aa		14.01	□□□□□ -0.17
PTPRF-205	ENST00000414879	TRPM1	Q7Z4N2	1603 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	ATP2B1	P20020	1258 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	CATIP	Q7Z7H3	387 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	PLBD2	Q8NHP8	589 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	TNIP1	Q15025	636 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	PLA2R1	Q13018	1463 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	SMTNL1	A8MU46	457 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	HLA-DOA	P06340	250 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	FBLN1	P23142	703 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	MCM4	P33991	863 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	PDE1A	P54750	535 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	ZNF790	Q6PG37	636 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	SAMD1	Q6SPF0	538 aa	Predicted RBP	14	□□□□□ -0.17
PTPRF-205	ENST00000414879	TBC1D9	Q6ZT07	1266 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	CEP57L1	Q8IYX8	460 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	NCOA7	Q8NI08	942 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	TRIM5	Q9C035	493 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	KRT23	Q9C075	422 aa		14	□□□□□ -0.17
PTPRF-205	ENST00000414879	BCL11B	Q9C0K0	894 aa	Predicted RBP	14	□□□□□ -0.17
PTPRF-205	ENST00000414879	SMC5	Q8IY18	1101 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	C8orf37	Q96NL8	207 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	C6orf229	H3BNL8	230 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	CTAGE5	O15320	804 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	ZBTB40	Q9NUA8	1239 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	AOX1	Q06278	1338 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	ANKAR	Q7Z5J8	1434 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	GOLIM4	O00461	696 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	PLCG2	P16885	1265 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	LMBR1L	Q6UX01	489 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	CCDC191	Q8NCU4	936 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	BTG4	Q9NY30	223 aa		13.99	□□□□□ -0.17
PTPRF-205	ENST00000414879	ORAI2	Q96SN7	254 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	NUP62CL	Q9H1M0	184 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	BCORL1	Q5H9F3	1711 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	MINDY4B	A8MYZ0	360 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	SLC52A2	Q9HAB3	445 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	CERS3	Q8IU89	383 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	C8orf76	Q96K31	380 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	SLC39A6	Q13433	755 aa		13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	RBM27	Q9P2N5	1060 aa	Known RBP	13.98	□□□□□ -0.17
PTPRF-205	ENST00000414879	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.98	□□□□□ -0.17	9e-8	■□□□□ 8.2
PTPRF-205	ENST00000414879	RDX	P35241	583 aa	Known RBP	13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	CABLES1	Q8TDN4	633 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	NEK1	Q96PY6	1258 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	ZNF804A	Q7Z570	1209 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	DIP2B	Q9P265	1576 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	IFIT3	O14879	490 aa	Known RBP	13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	GNAQ	P50148	359 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	SSRP1	Q08945	709 aa	Known RBP	13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	CEP85	Q6P2H3	762 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	TBC1D32	Q96NH3	1257 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	MCM5	P33992	734 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	MFSD6	Q6ZSS7	791 aa		13.97	□□□□□ -0.17
PTPRF-205	ENST00000414879	CLTCL1	P53675	1640 aa		13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	BMP15	O95972	392 aa		13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	METTL22	Q9BUU2	404 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	ACBD3	Q9H3P7	528 aa		13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	KIF20A	O95235	890 aa		13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	MCMDC2	Q4G0Z9	681 aa		13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	ABCA6	Q8N139	1617 aa		13.96	□□□□□ -0.17
PTPRF-205	ENST00000414879	CAVIN2	O95810	425 aa		13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	IGHD	P01880	384 aa		13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	EYA3	Q99504	573 aa		13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	DIP2C	Q9Y2E4	1556 aa		13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	NBPF14	Q5TI25	921 aa		13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	CABP5	Q9NP86	173 aa		13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	HDAC9	Q9UKV0	1011 aa		13.96	□□□□□ -0.18
PTPRF-205	ENST00000414879	EPB41L2	O43491	1005 aa	Known RBP	13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	MYO1B	O43795	1136 aa		13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	ZNF76	P36508	570 aa		13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	CUL5	Q93034	780 aa		13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	PCDHB15	Q9Y5E8	787 aa		13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	GOLGA8A	A7E2F4	631 aa		13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	GOLGA8B	A8MQT2	603 aa		13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	CCDC83	Q8IWF9	413 aa		13.95	□□□□□ -0.18
PTPRF-205	ENST00000414879	RANBP6	O60518	1105 aa	Known RBP	13.94	□□□□□ -0.18
PTPRF-205	ENST00000414879	MAP3K11	Q16584	847 aa		13.94	□□□□□ -0.18

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