RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TSPAN10Q9H1Z9 355 aaPredicted RBP6.63□□□□□ -1.35
HMGB1-204ENST00000399489 SUV39H2Q9H5I1 410 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 HCN4Q9Y3Q4 1203 aa6.63□□□□□ -1.35
HMGB1-204ENST00000399489 SIN3BO75182 1162 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 RASA1P20936 1047 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 HIRAP54198 1017 aaPredicted RBP6.62□□□□□ -1.35
HMGB1-204ENST00000399489 LCE4AQ5TA78 99 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 RGS22Q8NE09 1264 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 PHACTR1Q9C0D0 580 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 STRN4Q9NRL3 753 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 KIAA1024Q9UPX6 916 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 SEC13P55735 322 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 LRP8Q14114 963 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 PRRT3Q5FWE3 981 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 GLMNQ92990 594 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 KLF15Q9UIH9 416 aa6.62□□□□□ -1.35
HMGB1-204ENST00000399489 SFI1A8K8P3 1242 aa6.61□□□□□ -1.35
HMGB1-204ENST00000399489 HOXB4P17483 251 aaPredicted RBP6.61□□□□□ -1.35
HMGB1-204ENST00000399489 TRAIPQ9BWF2 469 aa6.61□□□□□ -1.35
HMGB1-204ENST00000399489 BRD7Q9NPI1 651 aa6.61□□□□□ -1.35
HMGB1-204ENST00000399489 KCNH4Q9UQ05 1017 aa6.61□□□□□ -1.35
HMGB1-204ENST00000399489 SPEM2Q0P670 501 aa6.6□□□□□ -1.35
HMGB1-204ENST00000399489 SFSWAPQ12872 951 aaKnown RBP6.6□□□□□ -1.35
HMGB1-204ENST00000399489 STAG2Q8N3U4 1231 aa6.6□□□□□ -1.35
HMGB1-204ENST00000399489 TSEN2Q8NCE0 465 aaKnown RBP6.6□□□□□ -1.35
HMGB1-204ENST00000399489 CALR3Q96L12 384 aaKnown RBP6.6□□□□□ -1.35
HMGB1-204ENST00000399489 TFIP11Q9UBB9 837 aaKnown RBP6.6□□□□□ -1.35
HMGB1-204ENST00000399489 ATAD2Q6PL18 1390 aa6.6□□□□□ -1.35
HMGB1-204ENST00000399489 ADARB2-AS1A8MUL3 147 aa6.59□□□□□ -1.35
HMGB1-204ENST00000399489 APBA3O96018 575 aa6.59□□□□□ -1.35
HMGB1-204ENST00000399489 SH3PXD2AQ5TCZ1 1133 aa6.59□□□□□ -1.35
HMGB1-204ENST00000399489 CLUAP1Q96AJ1 413 aa6.59□□□□□ -1.35
HMGB1-204ENST00000399489 HINFPQ9BQA5 517 aa6.59□□□□□ -1.35
HMGB1-204ENST00000399489 PLVAPQ9BX97 442 aa6.59□□□□□ -1.35
HMGB1-204ENST00000399489 C1QTNF9BB2RNN3 333 aa6.59□□□□□ -1.36
HMGB1-204ENST00000399489 SPATA31C1P0DKV0 1188 aa6.59□□□□□ -1.36
HMGB1-204ENST00000399489 CHMP7Q8WUX9 453 aaPredicted RBP6.59□□□□□ -1.36
HMGB1-204ENST00000399489 SCG3Q8WXD2 468 aaKnown RBP6.59□□□□□ -1.36
HMGB1-204ENST00000399489 HSH2DQ96JZ2 352 aa6.59□□□□□ -1.36
HMGB1-204ENST00000399489 SUSD3Q96L08 255 aa6.59□□□□□ -1.36
HMGB1-204ENST00000399489 MAFBQ9Y5Q3 323 aaPredicted RBP6.59□□□□□ -1.36
HMGB1-204ENST00000399489 SHROOM4Q9ULL8 1493 aa6.58□□□□□ -1.36
HMGB1-204ENST00000399489 ALDH16A1Q8IZ83 802 aa6.58□□□□□ -1.36
HMGB1-204ENST00000399489 TNFRSF25Q93038 417 aa6.58□□□□□ -1.36
HMGB1-204ENST00000399489 NGLY1Q96IV0 654 aa6.58□□□□□ -1.36
HMGB1-204ENST00000399489 EFCC1Q9HA90 598 aa6.58□□□□□ -1.36
HMGB1-204ENST00000399489 HCN2Q9UL51 889 aa6.58□□□□□ -1.36
HMGB1-204ENST00000399489 KCNQ4P56696 695 aa6.57□□□□□ -1.36
HMGB1-204ENST00000399489 DOC2BQ14184 412 aa6.57□□□□□ -1.36
HMGB1-204ENST00000399489 POTEAQ6S8J7 498 aa6.57□□□□□ -1.36
HMGB1-204ENST00000399489 SLC30A3Q99726 388 aa6.57□□□□□ -1.36
HMGB1-204ENST00000399489 A6NJR5 290 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 ADH7P40394 386 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 TYRO3Q06418 890 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 CD163Q86VB7 1156 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 FNBP4Q8N3X1 1017 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-204ENST00000399489 C7orf43Q8WVR3 580 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 VTI1AQ96AJ9 217 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 NACC1Q96RE7 527 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 VRTNQ9H8Y1 702 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 MTMR7Q9Y216 660 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 M0R082 166 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 EPB42P16452 691 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 GATA4P43694 442 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 JAG1P78504 1218 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 TRIM28Q13263 835 aaKnown RBP6.56□□□□□ -1.36
HMGB1-204ENST00000399489 ZNF417Q8TAU3 575 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 BHMTQ93088 406 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 TRIM11Q96F44 468 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 PNMA5Q96PV4 448 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 ZNF587Q96SQ5 575 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-204ENST00000399489 C2orf49Q9BVC5 232 aaPredicted RBP6.56□□□□□ -1.36
HMGB1-204ENST00000399489 PPP1R12CQ9BZL4 782 aa6.56□□□□□ -1.36
HMGB1-204ENST00000399489 TBC1D8BQ0IIM8 1120 aa6.55□□□□□ -1.36
HMGB1-204ENST00000399489 RTN1Q16799 776 aa6.55□□□□□ -1.36
HMGB1-204ENST00000399489 BTLAQ7Z6A9 289 aa6.55□□□□□ -1.36
HMGB1-204ENST00000399489 UBE2OQ9C0C9 1292 aaKnown RBP6.55□□□□□ -1.36
HMGB1-204ENST00000399489 PRDM6Q9NQX0 595 aa6.55□□□□□ -1.36
HMGB1-204ENST00000399489 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.55□□□□□ -1.36
HMGB1-204ENST00000399489 IGFBP4P22692 258 aa6.54□□□□□ -1.36
HMGB1-204ENST00000399489 DPYDQ12882 1025 aa6.54□□□□□ -1.36
HMGB1-204ENST00000399489 IER5Q5VY09 327 aa6.54□□□□□ -1.36
HMGB1-204ENST00000399489 ANKMY2Q8IV38 441 aa6.54□□□□□ -1.36
HMGB1-204ENST00000399489 ZNF280CQ8ND82 737 aa6.54□□□□□ -1.36
HMGB1-204ENST00000399489 FAM196BA6NMK8 535 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L15C9J2P7 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L10C9JJH3 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L13C9JLJ4 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L12C9JPN9 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L11C9JVI0 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L21D6R901 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L18D6R9N7 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L22D6RA61 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L17D6RBQ6 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L19D6RCP7 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 USP17L20D6RJB6 530 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 C21orf2O43822 256 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 DKK1O94907 266 aa6.53□□□□□ -1.36
HMGB1-204ENST00000399489 LMOD1P29536 600 aaPredicted RBP6.53□□□□□ -1.36
HMGB1-204ENST00000399489 CHRNA4P43681 627 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms