RNA–Protein interactions for RNA: ENST00000396082.2

UPK3A-202, Transcript of uroplakin 3A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene UPK3A, Length 627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-202ENST00000396082 WDR63Q8IWG1 891 aa22.56■■□□□ 1.2
UPK3A-202ENST00000396082 TSPYL6Q8N831 410 aa22.56■■□□□ 1.2
UPK3A-202ENST00000396082 RPGRQ92834 1020 aaKnown RBP22.56■■□□□ 1.2
UPK3A-202ENST00000396082 RIC1Q4ADV7 1423 aa22.56■■□□□ 1.2
UPK3A-202ENST00000396082 TWISTNBQ3B726 338 aaPredicted RBP22.55■■□□□ 1.2
UPK3A-202ENST00000396082 RIC3Q7Z5B4 369 aa22.55■■□□□ 1.2
UPK3A-202ENST00000396082 NLRP10Q86W26 655 aa22.55■■□□□ 1.2
UPK3A-202ENST00000396082 FANCIQ9NVI1 1328 aa22.55■■□□□ 1.2
UPK3A-202ENST00000396082 CCDC88AQ3V6T2 1871 aa22.54■■□□□ 1.2
UPK3A-202ENST00000396082 LMNB1P20700 586 aa22.54■■□□□ 1.2
UPK3A-202ENST00000396082 ALDH1B1P30837 517 aa22.54■■□□□ 1.2
UPK3A-202ENST00000396082 STK31Q9BXU1 1019 aa22.54■■□□□ 1.2
UPK3A-202ENST00000396082 PHAXQ9H814 394 aaKnown RBP22.54■■□□□ 1.2
UPK3A-202ENST00000396082 RNF123Q5XPI4 1314 aa22.54■■□□□ 1.2
UPK3A-202ENST00000396082 NFKBIEO00221 500 aa22.53■■□□□ 1.2
UPK3A-202ENST00000396082 TRMT112Q9UI30 125 aaKnown RBP22.53■■□□□ 1.2
UPK3A-202ENST00000396082 FER1L6Q2WGJ9 1857 aa22.53■■□□□ 1.2
UPK3A-202ENST00000396082 CRY2Q49AN0 593 aa22.52■■□□□ 1.2
UPK3A-202ENST00000396082 NLRP3Q96P20 1036 aa22.52■■□□□ 1.2
UPK3A-202ENST00000396082 TAOK3Q9H2K8 898 aa22.52■■□□□ 1.2
UPK3A-202ENST00000396082 SH3TC1Q8TE82 1336 aa22.52■■□□□ 1.2
UPK3A-202ENST00000396082 ATP5J2-PTCD1G3V325 749 aa22.51■■□□□ 1.19
UPK3A-202ENST00000396082 DDX58O95786 925 aaKnown RBP22.51■■□□□ 1.19
UPK3A-202ENST00000396082 CCDC93Q567U6 631 aa22.51■■□□□ 1.19
UPK3A-202ENST00000396082 ZNF428Q96B54 188 aa22.51■■□□□ 1.19
UPK3A-202ENST00000396082 TCERG1O14776 1098 aaKnown RBP22.5■■□□□ 1.19
UPK3A-202ENST00000396082 RBM17Q96I25 401 aaKnown RBP22.5■■□□□ 1.19
UPK3A-202ENST00000396082 TIAM2Q8IVF5 1701 aa22.5■■□□□ 1.19
UPK3A-202ENST00000396082 SLC10A5Q5PT55 438 aa22.49■■□□□ 1.19
UPK3A-202ENST00000396082 ISCA1Q9BUE6 129 aa22.49■■□□□ 1.19
UPK3A-202ENST00000396082 MYH16Q9H6N6 1097 aa22.49■■□□□ 1.19
UPK3A-202ENST00000396082 C3orf67Q6ZVT6 689 aa22.48■■□□□ 1.19
UPK3A-202ENST00000396082 ZC3H4Q9UPT8 1303 aaKnown RBP22.48■■□□□ 1.19
UPK3A-202ENST00000396082 CCER2I3L3R5 266 aa22.47■■□□□ 1.19
UPK3A-202ENST00000396082 HCLS1P14317 486 aaPredicted RBP22.47■■□□□ 1.19
UPK3A-202ENST00000396082 HOXA10P31260 410 aaPredicted RBP22.47■■□□□ 1.19
UPK3A-202ENST00000396082 PRELPP51888 382 aa22.47■■□□□ 1.19
UPK3A-202ENST00000396082 C1QTNF8P60827 252 aa22.47■■□□□ 1.19
UPK3A-202ENST00000396082 EXOSC9Q06265 439 aaKnown RBP22.47■■□□□ 1.19
UPK3A-202ENST00000396082 MYD88Q99836 296 aa22.47■■□□□ 1.19
UPK3A-202ENST00000396082 KDM2BQ8NHM5 1336 aa22.47■■□□□ 1.19
UPK3A-202ENST00000396082 LTBP3Q9NS15 1303 aa22.47■■□□□ 1.19
UPK3A-202ENST00000396082 LAMB2P55268 1798 aa22.47■■□□□ 1.19
UPK3A-202ENST00000396082 SYNE4Q8N205 404 aa22.46■■□□□ 1.19
UPK3A-202ENST00000396082 C7orf43Q8WVR3 580 aa22.46■■□□□ 1.19
UPK3A-202ENST00000396082 CRAMP1Q96RY5 1269 aa22.46■■□□□ 1.19
UPK3A-202ENST00000396082 DICER1Q9UPY3 1922 aaKnown RBP22.45■■□□□ 1.18
UPK3A-202ENST00000396082 SLC4A2P04920 1241 aa22.45■■□□□ 1.18
UPK3A-202ENST00000396082 OLFM4Q6UX06 510 aa22.45■■□□□ 1.18
UPK3A-202ENST00000396082 RTKN2Q8IZC4 609 aa22.45■■□□□ 1.18
UPK3A-202ENST00000396082 SPINK5Q9NQ38 1064 aaPredicted RBP22.45■■□□□ 1.18
UPK3A-202ENST00000396082 PPEF1O14829 653 aaPredicted RBP22.44■■□□□ 1.18
UPK3A-202ENST00000396082 RTL5Q5HYW3 569 aaPredicted RBP22.44■■□□□ 1.18
UPK3A-202ENST00000396082 FAM89AQ96GI7 184 aa22.44■■□□□ 1.18
UPK3A-202ENST00000396082 TMX4Q9H1E5 349 aaPredicted RBP22.44■■□□□ 1.18
UPK3A-202ENST00000396082 MAP3K2Q9Y2U5 619 aa22.44■■□□□ 1.18
UPK3A-202ENST00000396082 DDX60Q8IY21 1712 aaKnown RBP22.43■■□□□ 1.18
UPK3A-202ENST00000396082 FKBP4Q02790 459 aaKnown RBP eCLIP22.43■■□□□ 1.18
UPK3A-202ENST00000396082 TRIM28Q13263 835 aaKnown RBP22.43■■□□□ 1.18
UPK3A-202ENST00000396082 CC2D2BQ6DHV5 1058 aa22.43■■□□□ 1.18
UPK3A-202ENST00000396082 KSR2Q6VAB6 950 aa22.43■■□□□ 1.18
UPK3A-202ENST00000396082 METTL22Q9BUU2 404 aaPredicted RBP22.43■■□□□ 1.18
UPK3A-202ENST00000396082 NMRK2Q9NPI5 230 aa22.43■■□□□ 1.18
UPK3A-202ENST00000396082 CACNA1FO60840 1977 aa22.42■■□□□ 1.18
UPK3A-202ENST00000396082 DDX46Q7L014 1031 aaKnown RBP22.42■■□□□ 1.18
UPK3A-202ENST00000396082 ABCC4O15439 1325 aa22.41■■□□□ 1.18
UPK3A-202ENST00000396082 PI4KAP2A4QPH2 592 aa22.41■■□□□ 1.18
UPK3A-202ENST00000396082 KIF3CO14782 793 aa22.41■■□□□ 1.18
UPK3A-202ENST00000396082 VAMP4O75379 141 aa22.41■■□□□ 1.18
UPK3A-202ENST00000396082 NEXNQ0ZGT2 675 aa22.41■■□□□ 1.18
UPK3A-202ENST00000396082 PI4KAP1Q8N8J0 262 aa22.41■■□□□ 1.18
UPK3A-202ENST00000396082 CCDC191Q8NCU4 936 aa22.41■■□□□ 1.18
UPK3A-202ENST00000396082 CWC25Q9NXE8 425 aaPredicted RBP22.41■■□□□ 1.18
UPK3A-202ENST00000396082 IRS4O14654 1257 aaPredicted RBP22.4■■□□□ 1.18
UPK3A-202ENST00000396082 G2E3Q7L622 706 aa22.4■■□□□ 1.18
UPK3A-202ENST00000396082 ZNF277Q9NRM2 450 aaPredicted RBP22.4■■□□□ 1.18
UPK3A-202ENST00000396082 ZNF521Q96K83 1311 aa22.39■■□□□ 1.18
UPK3A-202ENST00000396082 GLTPD2A6NH11 291 aa22.39■■□□□ 1.17
UPK3A-202ENST00000396082 HSP90B1P14625 803 aaKnown RBP22.39■■□□□ 1.17
UPK3A-202ENST00000396082 FLIIQ13045 1269 aa22.39■■□□□ 1.17
UPK3A-202ENST00000396082 FKBP5Q13451 457 aaPredicted RBP22.39■■□□□ 1.17
UPK3A-202ENST00000396082 DIEXFQ68CQ4 756 aaKnown RBP22.39■■□□□ 1.17
UPK3A-202ENST00000396082 DPY19L2Q6NUT2 758 aa22.39■■□□□ 1.17
UPK3A-202ENST00000396082 C16orf71Q8IYS4 520 aaPredicted RBP22.39■■□□□ 1.17
UPK3A-202ENST00000396082 ZBTB38Q8NAP3 1195 aaPredicted RBP22.39■■□□□ 1.17
UPK3A-202ENST00000396082 GRIPAP1Q4V328 841 aa22.38■■□□□ 1.17
UPK3A-202ENST00000396082 PSMD1Q99460 953 aa22.37■■□□□ 1.17
UPK3A-202ENST00000396082 RRAGCQ9HB90 399 aa22.37■■□□□ 1.17
UPK3A-202ENST00000396082 BBOX1O75936 387 aa22.36■■□□□ 1.17
UPK3A-202ENST00000396082 PCCAP05165 728 aaPredicted RBP22.36■■□□□ 1.17
UPK3A-202ENST00000396082 IARSP41252 1262 aaKnown RBP22.36■■□□□ 1.17
UPK3A-202ENST00000396082 GRAPQ13588 217 aa22.36■■□□□ 1.17
UPK3A-202ENST00000396082 GRAPLQ8TC17 118 aaPredicted RBP22.36■■□□□ 1.17
UPK3A-202ENST00000396082 ATP6V0A2Q9Y487 856 aa22.36■■□□□ 1.17
UPK3A-202ENST00000396082 TAF1P21675 1872 aa22.36■■□□□ 1.17
UPK3A-202ENST00000396082 SNED1Q8TER0 1413 aa22.35■■□□□ 1.17
UPK3A-202ENST00000396082 E9PSI1 815 aa22.35■■□□□ 1.17
UPK3A-202ENST00000396082 SF3B3Q15393 1217 aaKnown RBP22.35■■□□□ 1.17
UPK3A-202ENST00000396082 TOMM70O94826 608 aa22.34■■□□□ 1.17
UPK3A-202ENST00000396082 JARID2Q92833 1246 aaPredicted RBP22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms