RNA–Protein interactions for RNA: ENST00000394804.6

UBE2D3-209, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 4,166 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-209ENST00000394804 USP6P35125 1406 aa13.77□□□□□ -0.2
UBE2D3-209ENST00000394804 ROBO2Q9HCK4 1378 aa13.77□□□□□ -0.2
UBE2D3-209ENST00000394804 GRM8O00222 908 aa13.77□□□□□ -0.21
UBE2D3-209ENST00000394804 ZNF500O60304 480 aaPredicted RBP13.77□□□□□ -0.21
UBE2D3-209ENST00000394804 ME1P48163 572 aa13.77□□□□□ -0.21
UBE2D3-209ENST00000394804 MYD88Q99836 296 aa13.77□□□□□ -0.21
UBE2D3-209ENST00000394804 CPA1P15085 419 aa13.77□□□□□ -0.21
UBE2D3-209ENST00000394804 VIRMAQ69YN4 1812 aaKnown RBP13.77□□□□□ -0.21
UBE2D3-209ENST00000394804 TMEM94Q12767 1356 aa13.77□□□□□ -0.21
UBE2D3-209ENST00000394804 NBPF7P0C2Y1 421 aaPredicted RBP13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 LINS1Q8NG48 757 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 IGSF1Q8N6C5 1336 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 TRIM29Q14134 588 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 STK38Q15208 465 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 IL17REQ8NFR9 667 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 FAM200AQ8TCP9 573 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 CCDC171Q6TFL3 1326 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 IFT172Q9UG01 1749 aa13.76□□□□□ -0.21
UBE2D3-209ENST00000394804 DHX16O60231 1041 aaKnown RBP13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 CCDC112Q8NEF3 446 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 TCEANC2Q96MN5 208 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 PIP4K2BP78356 416 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 CREB3L3Q68CJ9 461 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 TOMM22Q9NS69 142 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 NRXN3Q9Y4C0 1643 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 NMIQ13287 307 aaPredicted RBP13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 RUFY3Q7L099 469 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 UNC5CLQ8IV45 518 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 KDM4AO75164 1064 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 APPP05067 770 aa13.75□□□□□ -0.21
UBE2D3-209ENST00000394804 HOMER1Q86YM7 354 aa13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 CEP57L1Q8IYX8 460 aa13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 IP6K1Q92551 441 aa13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 DLC1Q96QB1 1528 aa13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 CYP2E1P05181 493 aaPredicted RBP13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 ATF3P18847 181 aa13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 CWF19L2Q2TBE0 894 aaKnown RBP13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 PDCL2Q8N4E4 241 aa13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 NEK1Q96PY6 1258 aa13.74□□□□□ -0.21
UBE2D3-209ENST00000394804 HMGB1P09429 215 aaKnown RBP13.73□□□□□ -0.21
UBE2D3-209ENST00000394804 ZNF165P49910 485 aa13.73□□□□□ -0.21
UBE2D3-209ENST00000394804 CABP4P57796 275 aa13.73□□□□□ -0.21
UBE2D3-209ENST00000394804 ZC3H6P61129 1189 aaKnown RBP13.73□□□□□ -0.21
UBE2D3-209ENST00000394804 CD163L1Q9NR16 1453 aa13.73□□□□□ -0.21
UBE2D3-209ENST00000394804 ATP10DQ9P241 1426 aa13.73□□□□□ -0.21
UBE2D3-209ENST00000394804 DACT1Q9NYF0 836 aa13.73□□□□□ -0.21
UBE2D3-209ENST00000394804 SMC2O95347 1197 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 ANKRD24Q8TF21 1146 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 NPHP3Q7Z494 1330 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 CTAGE5O15320 804 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 EIF4A1P60842 406 aaKnown RBP13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 ZNF771Q7L3S4 317 aaPredicted RBP13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 FILIP1Q7Z7B0 1213 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 LRRC59Q96AG4 307 aaKnown RBP13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 CAVIN2O95810 425 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 CCDC158Q5M9N0 1113 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 FMNL2Q96PY5 1086 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 ZMYND15Q9H091 742 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 TM6SF1Q9BZW5 370 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 LGR6Q9HBX8 967 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 CLIP2Q9UDT6 1046 aa13.72□□□□□ -0.21
UBE2D3-209ENST00000394804 TYRO3Q06418 890 aa13.71□□□□□ -0.21
UBE2D3-209ENST00000394804 NFXL1Q6ZNB6 911 aa13.71□□□□□ -0.21
UBE2D3-209ENST00000394804 BCL11BQ9C0K0 894 aaPredicted RBP13.71□□□□□ -0.21
UBE2D3-209ENST00000394804 ZSCAN16Q9H4T2 348 aaPredicted RBP13.71□□□□□ -0.21
UBE2D3-209ENST00000394804 ANO10Q9NW15 660 aa13.71□□□□□ -0.21
UBE2D3-209ENST00000394804 CTNNA3Q9UI47 895 aa13.71□□□□□ -0.21
UBE2D3-209ENST00000394804 ZDHHC9Q9Y397 364 aa13.71□□□□□ -0.21
UBE2D3-209ENST00000394804 A0A087WZG4 1122 aa13.71□□□□□ -0.22
UBE2D3-209ENST00000394804 UBAP1LF5GYI3 381 aa13.71□□□□□ -0.22
UBE2D3-209ENST00000394804 PIBF1Q8WXW3 757 aa13.71□□□□□ -0.22
UBE2D3-209ENST00000394804 HOOK1Q9UJC3 728 aaKnown RBP13.71□□□□□ -0.22
UBE2D3-209ENST00000394804 NSFL1CQ9UNZ2 370 aaKnown RBP13.71□□□□□ -0.22
UBE2D3-209ENST00000394804 ANO6Q4KMQ2 910 aa13.7□□□□□ -0.22
UBE2D3-209ENST00000394804 TTC39AQ5SRH9 613 aa13.7□□□□□ -0.22
UBE2D3-209ENST00000394804 UBE3BQ7Z3V4 1068 aa13.7□□□□□ -0.22
UBE2D3-209ENST00000394804 CEP126Q9P2H0 1117 aa13.7□□□□□ -0.22
UBE2D3-209ENST00000394804 RNMTO43148 476 aaKnown RBP13.7□□□□□ -0.22
UBE2D3-209ENST00000394804 CERKQ8TCT0 537 aa13.7□□□□□ -0.22
UBE2D3-209ENST00000394804 BRF1Q92994 677 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 C16orf45Q96MC5 204 aaPredicted RBP13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 LSG1Q9H089 658 aaKnown RBP13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 C19orf44Q9H6X5 657 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 FKBP4Q02790 459 aaKnown RBP eCLIP13.69□□□□□ -0.222e-9■■□□□ 12.2
UBE2D3-209ENST00000394804 DHX8Q14562 1220 aaKnown RBP13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 BEND3Q5T5X7 828 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 XAGE3Q8WTP9 111 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 BICC1Q9H694 974 aaKnown RBP13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 TNNT1P13805 278 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 ANKRD13DQ6ZTN6 518 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 RASEFQ8IZ41 740 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 DDX21Q9NR30 783 aaKnown RBP eCLIP13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 MAP2P11137 1827 aaKnown RBP13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 KIF20BQ96Q89 1820 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 CDC42BPGQ6DT37 1551 aa13.69□□□□□ -0.22
UBE2D3-209ENST00000394804 SLC27A2O14975 620 aa13.68□□□□□ -0.22
UBE2D3-209ENST00000394804 CCDC186Q7Z3E2 898 aa13.68□□□□□ -0.22
UBE2D3-209ENST00000394804 SAFBQ15424 915 aaKnown RBP eCLIP13.68□□□□□ -0.22
UBE2D3-209ENST00000394804 OLFM4Q6UX06 510 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms