RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 TAF7LQ5H9L4 462 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 RASEFQ8IZ41 740 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 DBNDD2Q9BQY9 259 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 BRPF3Q9ULD4 1205 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 TTC41PQ6P2S7 1318 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 STARD3NLO95772 234 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 MCTP1Q6DN14 999 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 RUFY2Q8WXA3 655 aa13.46□□□□□ -0.25
TCOF1-203ENST00000394269 ATG3Q9NT62 314 aa13.46□□□□□ -0.26
TCOF1-203ENST00000394269 KIF6Q6ZMV9 814 aa13.45□□□□□ -0.26
TCOF1-203ENST00000394269 DDX46Q7L014 1031 aaKnown RBP13.45□□□□□ -0.26
TCOF1-203ENST00000394269 EVI5LQ96CN4 794 aa13.45□□□□□ -0.26
TCOF1-203ENST00000394269 NMIQ13287 307 aaPredicted RBP13.45□□□□□ -0.26
TCOF1-203ENST00000394269 RAB3GAP1Q15042 981 aa13.45□□□□□ -0.26
TCOF1-203ENST00000394269 LRRC24Q50LG9 513 aa13.45□□□□□ -0.26
TCOF1-203ENST00000394269 DBNLQ9UJU6 430 aaKnown RBP13.45□□□□□ -0.26
TCOF1-203ENST00000394269 KDM3BQ7LBC6 1761 aa13.45□□□□□ -0.26
TCOF1-203ENST00000394269 PHRF1Q9P1Y6 1649 aaKnown RBP13.45□□□□□ -0.26
TCOF1-203ENST00000394269 CASTP20810 708 aaKnown RBP13.45□□□□□ -0.26
TCOF1-203ENST00000394269 TCEANC2Q96MN5 208 aa13.45□□□□□ -0.26
TCOF1-203ENST00000394269 UTYO14607 1347 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 AOX1Q06278 1338 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 TNNI3KQ59H18 835 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 GORABQ5T7V8 394 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 PUS3Q9BZE2 481 aaKnown RBP13.44□□□□□ -0.26
TCOF1-203ENST00000394269 FPGT-TNNI3KV9GXZ4 949 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 CACNA1FO60840 1977 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 NKX1-1Q15270 411 aaPredicted RBP13.44□□□□□ -0.26
TCOF1-203ENST00000394269 SLFNL1Q499Z3 407 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 GOLGA6L22H0YM25 854 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 CCDC57Q2TAC2 916 aa13.44□□□□□ -0.26
TCOF1-203ENST00000394269 JAKMIP1Q96N16 626 aaKnown RBP13.44□□□□□ -0.26
TCOF1-203ENST00000394269 CIZ1Q9ULV3 898 aaPredicted RBP13.44□□□□□ -0.26
TCOF1-203ENST00000394269 DDX11L8A8MPP1 907 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 HLFQ16534 295 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 NGLY1Q96IV0 654 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 SNX14Q9Y5W7 946 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 HSPA4P34932 840 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 DDIT3P35638 169 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 LSG1Q9H089 658 aaKnown RBP13.43□□□□□ -0.26
TCOF1-203ENST00000394269 COPRSQ9NQ92 184 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 SNRKQ9NRH2 765 aa13.43□□□□□ -0.26
TCOF1-203ENST00000394269 A0A0D9SFI3 127 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 KCNQ4P56696 695 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 ZBTB1Q9Y2K1 713 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 DDB1Q16531 1140 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 CCDC129Q6ZRS4 1044 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 SEC62Q99442 399 aaKnown RBP13.42□□□□□ -0.26
TCOF1-203ENST00000394269 STRCQ7RTU9 1775 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 H7C1W4 665 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 RFX5P48382 616 aaPredicted RBP13.42□□□□□ -0.26
TCOF1-203ENST00000394269 FOXO4P98177 505 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 FKBP4Q02790 459 aaKnown RBP eCLIP13.42□□□□□ -0.26
TCOF1-203ENST00000394269 ADCK5Q3MIX3 580 aa13.42□□□□□ -0.26
TCOF1-203ENST00000394269 DDX49Q9Y6V7 483 aaKnown RBP13.42□□□□□ -0.26
TCOF1-203ENST00000394269 GOLIM4O00461 696 aa13.41□□□□□ -0.26
TCOF1-203ENST00000394269 TOM1O60784 492 aa13.41□□□□□ -0.26
TCOF1-203ENST00000394269 CCDC191Q8NCU4 936 aa13.41□□□□□ -0.26
TCOF1-203ENST00000394269 RAD50Q92878 1312 aa13.41□□□□□ -0.26
TCOF1-203ENST00000394269 COL18A1P39060 1754 aa13.41□□□□□ -0.26
TCOF1-203ENST00000394269 BAG4O95429 457 aaKnown RBP13.41□□□□□ -0.26
TCOF1-203ENST00000394269 ZKSCAN1P17029 563 aaPredicted RBP13.41□□□□□ -0.26
TCOF1-203ENST00000394269 TCIRG1Q13488 830 aa13.41□□□□□ -0.26
TCOF1-203ENST00000394269 NUCB2P80303 420 aa13.41□□□□□ -0.26
TCOF1-203ENST00000394269 TRMT112Q9UI30 125 aaKnown RBP13.41□□□□□ -0.26
TCOF1-203ENST00000394269 PRPF40AO75400 957 aaKnown RBP13.4□□□□□ -0.26
TCOF1-203ENST00000394269 SLC4A9Q96Q91 983 aa13.4□□□□□ -0.26
TCOF1-203ENST00000394269 RBM8AQ9Y5S9 174 aaKnown RBP13.4□□□□□ -0.26
TCOF1-203ENST00000394269 ZNF589Q86UQ0 364 aaPredicted RBP13.4□□□□□ -0.26
TCOF1-203ENST00000394269 CEP126Q9P2H0 1117 aa13.4□□□□□ -0.26
TCOF1-203ENST00000394269 AK2P54819 239 aa13.39□□□□□ -0.27
TCOF1-203ENST00000394269 CASP7P55210 303 aa13.39□□□□□ -0.27
TCOF1-203ENST00000394269 ANAPC15P60006 121 aa13.39□□□□□ -0.27
TCOF1-203ENST00000394269 RABL6Q3YEC7 729 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-203ENST00000394269 ATP6V1AP38606 617 aa13.39□□□□□ -0.27
TCOF1-203ENST00000394269 GOLGA6L3A6NEY3 463 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 TEX13AQ9BXU3 409 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-203ENST00000394269 CWC22Q9HCG8 908 aaKnown RBP13.38□□□□□ -0.27
TCOF1-203ENST00000394269 IFIT5Q13325 482 aaKnown RBP13.38□□□□□ -0.27
TCOF1-203ENST00000394269 COL9A3Q14050 684 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-203ENST00000394269 GDPD2Q9HCC8 539 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 PDRG1Q9NUG6 133 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 ERBB4Q15303 1308 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 XIRP1Q702N8 1843 aaKnown RBP13.38□□□□□ -0.27
TCOF1-203ENST00000394269 MCM2P49736 904 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 FAM98CQ17RN3 349 aaKnown RBP13.38□□□□□ -0.27
TCOF1-203ENST00000394269 SMIM5Q71RC9 77 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 DZIP3Q86Y13 1208 aaKnown RBP13.38□□□□□ -0.27
TCOF1-203ENST00000394269 NECAB1Q8N987 351 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 TAF6LQ9Y6J9 622 aa13.38□□□□□ -0.27
TCOF1-203ENST00000394269 CCDC171Q6TFL3 1326 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 A0A1B0GUL7 405 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 EYA2O00167 538 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 KCNQ2O43526 872 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 STK3Q13188 491 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 ATG9AQ7Z3C6 839 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 CCDC83Q8IWF9 413 aa13.37□□□□□ -0.27
TCOF1-203ENST00000394269 HELBQ8NG08 1087 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-203ENST00000394269 NAP1L2Q9ULW6 460 aaPredicted RBP13.37□□□□□ -0.27
TCOF1-203ENST00000394269 FGD1P98174 961 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms