RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ZNF710Q8N1W2 664 aa13.46□□□□□ -0.25
CUX1-204ENST00000393824 FMNL2Q96PY5 1086 aa13.46□□□□□ -0.25
CUX1-204ENST00000393824 SYCE3A1L190 88 aa13.46□□□□□ -0.26
CUX1-204ENST00000393824 MBD3O95983 291 aa13.46□□□□□ -0.26
CUX1-204ENST00000393824 CCDC30Q5VVM6 783 aa13.46□□□□□ -0.26
CUX1-204ENST00000393824 UBR2Q8IWV8 1755 aa13.45□□□□□ -0.26
CUX1-204ENST00000393824 FLIIQ13045 1269 aa13.45□□□□□ -0.26
CUX1-204ENST00000393824 LRP10Q7Z4F1 713 aa13.45□□□□□ -0.26
CUX1-204ENST00000393824 ZDHHC9Q9Y397 364 aa13.45□□□□□ -0.26
CUX1-204ENST00000393824 HOXB7P09629 217 aa13.45□□□□□ -0.26
CUX1-204ENST00000393824 SNRPA1P09661 255 aaKnown RBP13.45□□□□□ -0.26
CUX1-204ENST00000393824 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.45□□□□□ -0.261e-9■■□□□ 12.2
CUX1-204ENST00000393824 ABCC4O15439 1325 aa13.45□□□□□ -0.26
CUX1-204ENST00000393824 NBPF26B4DH59 902 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 MYL6BP14649 208 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 NBPF14Q5TI25 921 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 NBPF10Q6P3W6 841 aaKnown RBP13.44□□□□□ -0.26
CUX1-204ENST00000393824 DNAJC10Q8IXB1 793 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 NBPF15Q8N660 670 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 PIBF1Q8WXW3 757 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 A1BGP04217 495 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 ZNF772Q68DY9 489 aaPredicted RBP13.44□□□□□ -0.26
CUX1-204ENST00000393824 STK31Q9BXU1 1019 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 USP26Q9BXU7 913 aa13.44□□□□□ -0.26
CUX1-204ENST00000393824 PPP4R3BQ5MIZ7 849 aa13.43□□□□□ -0.26
CUX1-204ENST00000393824 PAXIP1Q6ZW49 1069 aaPredicted RBP13.43□□□□□ -0.26
CUX1-204ENST00000393824 RBM6P78332 1123 aaKnown RBP13.42□□□□□ -0.26
CUX1-204ENST00000393824 API5Q9BZZ5 524 aaKnown RBP13.42□□□□□ -0.26
CUX1-204ENST00000393824 BRWD3Q6RI45 1802 aa13.42□□□□□ -0.26
CUX1-204ENST00000393824 GOLGB1Q14789 3259 aaKnown RBP13.42□□□□□ -0.26
CUX1-204ENST00000393824 PTMAP06454 111 aaKnown RBP13.42□□□□□ -0.26
CUX1-204ENST00000393824 FKBP5Q13451 457 aaPredicted RBP13.42□□□□□ -0.26
CUX1-204ENST00000393824 NOLC1Q14978 699 aaKnown RBP eCLIP13.42□□□□□ -0.263e-6■■□□□ 12.3
CUX1-204ENST00000393824 DNTTIP2Q5QJE6 756 aaKnown RBP13.42□□□□□ -0.26
CUX1-204ENST00000393824 NSFL1CQ9UNZ2 370 aaKnown RBP13.42□□□□□ -0.26
CUX1-204ENST00000393824 CBX1P83916 185 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 DBF4Q9UBU7 674 aaPredicted RBP13.41□□□□□ -0.26
CUX1-204ENST00000393824 KIF3AQ9Y496 699 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 SOS1Q07889 1333 aaPredicted RBP13.41□□□□□ -0.26
CUX1-204ENST00000393824 ST18O60284 1047 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 GSPT1P15170 499 aaKnown RBP13.41□□□□□ -0.26
CUX1-204ENST00000393824 AIMP1Q12904 312 aaKnown RBP13.41□□□□□ -0.26
CUX1-204ENST00000393824 ITPK1Q13572 414 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 UVSSAQ2YD98 709 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 SLC4A10Q6U841 1118 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 SIRT2Q8IXJ6 389 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 TSPY26PQ9H489 355 aa13.41□□□□□ -0.26
CUX1-204ENST00000393824 ATP2B3Q16720 1220 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 KRT27Q7Z3Y8 459 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 ILDR1Q86SU0 546 aaPredicted RBP13.4□□□□□ -0.26
CUX1-204ENST00000393824 ZGPATQ8N5A5 531 aaKnown RBP13.4□□□□□ -0.26
CUX1-204ENST00000393824 SPTLC3Q9NUV7 552 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 ADCY9O60503 1353 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 PALLDQ8WX93 1383 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 SRCAPQ6ZRS2 3230 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 PI4KAP2A4QPH2 592 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 PI4KAP1Q8N8J0 262 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 RNF214Q8ND24 703 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 DCTPP1Q9H773 170 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 DDX21Q9NR30 783 aaKnown RBP eCLIP13.4□□□□□ -0.261e-7■□□□□ 10.9
CUX1-204ENST00000393824 TMEM51Q9NW97 253 aa13.4□□□□□ -0.26
CUX1-204ENST00000393824 RXRBP28702 533 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 PLEKHM2Q8IWE5 1019 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 FAM184AQ8NB25 1140 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 C1orf115Q9H7X2 142 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 PTPRCP08575 1304 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 LOC102724428A0A0B4J2F2 783 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 SIK1P57059 783 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 SMIM5Q71RC9 77 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 COPS6Q7L5N1 327 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 XAGE3Q8WTP9 111 aa13.39□□□□□ -0.27
CUX1-204ENST00000393824 JARID2Q92833 1246 aaPredicted RBP13.39□□□□□ -0.27
CUX1-204ENST00000393824 SYAP1Q96A49 352 aaPredicted RBP13.39□□□□□ -0.27
CUX1-204ENST00000393824 TTC22Q5TAA0 569 aa13.38□□□□□ -0.27
CUX1-204ENST00000393824 TAF3Q5VWG9 929 aa13.38□□□□□ -0.27
CUX1-204ENST00000393824 INTS3Q68E01 1043 aaKnown RBP13.38□□□□□ -0.27
CUX1-204ENST00000393824 CYP19A1P11511 503 aaPredicted RBP13.38□□□□□ -0.27
CUX1-204ENST00000393824 TTLL7Q6ZT98 887 aa13.38□□□□□ -0.27
CUX1-204ENST00000393824 KLHL34Q8N239 644 aa13.38□□□□□ -0.27
CUX1-204ENST00000393824 TSC1Q92574 1164 aa13.38□□□□□ -0.27
CUX1-204ENST00000393824 ZBTB1Q9Y2K1 713 aa13.38□□□□□ -0.27
CUX1-204ENST00000393824 TRIM37O94972 964 aa13.37□□□□□ -0.27
CUX1-204ENST00000393824 ATP6V1AP38606 617 aa13.37□□□□□ -0.27
CUX1-204ENST00000393824 CASC1Q6TDU7 716 aa13.37□□□□□ -0.27
CUX1-204ENST00000393824 BCL2L12Q9HB09 334 aa13.37□□□□□ -0.27
CUX1-204ENST00000393824 PHF14O94880 888 aa13.36□□□□□ -0.27
CUX1-204ENST00000393824 MEIS3Q99687 375 aa13.36□□□□□ -0.27
CUX1-204ENST00000393824 MAP3K2Q9Y2U5 619 aa13.36□□□□□ -0.27
CUX1-204ENST00000393824 ZNF330Q9Y3S2 320 aaPredicted RBP13.36□□□□□ -0.27
CUX1-204ENST00000393824 BRD1O95696 1058 aa13.36□□□□□ -0.27
CUX1-204ENST00000393824 RPAP2Q8IXW5 612 aaPredicted RBP13.36□□□□□ -0.27
CUX1-204ENST00000393824 TJP1Q07157 1748 aa13.36□□□□□ -0.27
CUX1-204ENST00000393824 BTAF1O14981 1849 aa13.36□□□□□ -0.27
CUX1-204ENST00000393824 SBF2Q86WG5 1849 aa13.36□□□□□ -0.27
CUX1-204ENST00000393824 LAMB4A4D0S4 1761 aa13.35□□□□□ -0.27
CUX1-204ENST00000393824 AMIGO3Q86WK7 504 aa13.35□□□□□ -0.27
CUX1-204ENST00000393824 PDCL2Q8N4E4 241 aa13.35□□□□□ -0.27
CUX1-204ENST00000393824 ANKRD7Q92527 254 aa13.35□□□□□ -0.27
CUX1-204ENST00000393824 HYPKQ9NX55 129 aa13.35□□□□□ -0.27
CUX1-204ENST00000393824 CWF19L2Q2TBE0 894 aaKnown RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms