RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 TTC14Q96N46 770 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 BIVM-ERCC5R4GMW8 1640 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 TDRD12Q587J7 1177 aaKnown RBP10.99□□□□□ -0.65
SNX1-202ENST00000380285 SLF2Q8IX21 1173 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 GOPCQ9HD26 462 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 TMX3Q96JJ7 454 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 NEK1Q96PY6 1258 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 CDK13Q14004 1512 aaKnown RBP10.99□□□□□ -0.65
SNX1-202ENST00000380285 CAVIN4Q5BKX8 364 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.99□□□□□ -0.65
SNX1-202ENST00000380285 PAF1Q8N7H5 531 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 HCLS1P14317 486 aaPredicted RBP10.99□□□□□ -0.65
SNX1-202ENST00000380285 ATP2B2Q01814 1243 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 TMTC2Q8N394 836 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 RASAL2Q9UJF2 1139 aa10.99□□□□□ -0.65
SNX1-202ENST00000380285 GOLGA8AA7E2F4 631 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 SAMD1Q6SPF0 538 aaPredicted RBP10.98□□□□□ -0.65
SNX1-202ENST00000380285 FMNL3Q8IVF7 1028 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 ARFGAP2Q8N6H7 521 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 ZFYP08048 801 aaPredicted RBP10.98□□□□□ -0.65
SNX1-202ENST00000380285 IARSP41252 1262 aaKnown RBP10.98□□□□□ -0.65
SNX1-202ENST00000380285 SYKP43405 635 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 KRT83P78385 493 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 BOLA2Q9H3K6 86 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 TTC12Q9H892 705 aaPredicted RBP10.98□□□□□ -0.65
SNX1-202ENST00000380285 JADE2Q9NQC1 790 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 POGZQ7Z3K3 1410 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 MAATS1Q7Z4T9 603 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 NCOA7Q8NI08 942 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 SLC5A1P13866 664 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 FAM69CQ0P6D2 419 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 PPP4R3AQ6IN85 833 aa10.98□□□□□ -0.65
SNX1-202ENST00000380285 SMARCA5O60264 1052 aaPredicted RBP10.97□□□□□ -0.65
SNX1-202ENST00000380285 SSR1P43307 286 aaKnown RBP10.97□□□□□ -0.65
SNX1-202ENST00000380285 SREK1Q8WXA9 508 aaKnown RBP10.97□□□□□ -0.65
SNX1-202ENST00000380285 CEP63Q96MT8 703 aa10.97□□□□□ -0.65
SNX1-202ENST00000380285 BCCIPQ9P287 314 aaKnown RBP eCLIP10.97□□□□□ -0.65
SNX1-202ENST00000380285 NUDT16Q96DE0 195 aaKnown RBP10.97□□□□□ -0.65
SNX1-202ENST00000380285 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.97□□□□□ -0.65
SNX1-202ENST00000380285 EBAG9O00559 213 aa10.97□□□□□ -0.65
SNX1-202ENST00000380285 ANO6Q4KMQ2 910 aa10.97□□□□□ -0.65
SNX1-202ENST00000380285 MRPS27Q92552 414 aaKnown RBP10.97□□□□□ -0.65
SNX1-202ENST00000380285 FERMT1Q9BQL6 677 aa10.97□□□□□ -0.65
SNX1-202ENST00000380285 NEBLO76041 1014 aa10.97□□□□□ -0.65
SNX1-202ENST00000380285 FLIIQ13045 1269 aa10.97□□□□□ -0.65
SNX1-202ENST00000380285 IFIT5Q13325 482 aaKnown RBP10.96□□□□□ -0.65
SNX1-202ENST00000380285 IFIT3O14879 490 aaKnown RBP10.96□□□□□ -0.65
SNX1-202ENST00000380285 ZHX1Q9UKY1 873 aaPredicted RBP10.96□□□□□ -0.65
SNX1-202ENST00000380285 RRS1Q15050 365 aaKnown RBP10.96□□□□□ -0.65
SNX1-202ENST00000380285 LMBR1Q8WVP7 490 aa10.96□□□□□ -0.65
SNX1-202ENST00000380285 KRT86O43790 486 aa10.96□□□□□ -0.66
SNX1-202ENST00000380285 NPHP3Q7Z494 1330 aa10.96□□□□□ -0.66
SNX1-202ENST00000380285 KIAA0753Q2KHM9 967 aa10.96□□□□□ -0.66
SNX1-202ENST00000380285 SOS1Q07889 1333 aaPredicted RBP10.96□□□□□ -0.66
SNX1-202ENST00000380285 N4BP3O15049 544 aa10.96□□□□□ -0.66
SNX1-202ENST00000380285 TACC1O75410 805 aa10.96□□□□□ -0.66
SNX1-202ENST00000380285 NLRP5P59047 1200 aa10.96□□□□□ -0.66
SNX1-202ENST00000380285 MKNK2Q9HBH9 465 aa10.96□□□□□ -0.66
SNX1-202ENST00000380285 SPDYE4A6NLX3 237 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 F13A1P00488 732 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 NBPF7P0C2Y1 421 aaPredicted RBP10.95□□□□□ -0.66
SNX1-202ENST00000380285 METAP2P50579 478 aaKnown RBP eCLIP10.95□□□□□ -0.66
SNX1-202ENST00000380285 NBPF11Q86T75 865 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 TSGA10Q9BZW7 698 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 TICAM2Q86XR7 235 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 CUL5Q93034 780 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 CNNM2Q9H8M5 875 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 RBM27Q9P2N5 1060 aaKnown RBP10.95□□□□□ -0.66
SNX1-202ENST00000380285 ORC3Q9UBD5 711 aaPredicted RBP10.95□□□□□ -0.66
SNX1-202ENST00000380285 UBA7P41226 1012 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 USP48Q86UV5 1035 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 CCDC77Q9BR77 488 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 USP16Q9Y5T5 823 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 MEX3CQ5U5Q3 659 aaKnown RBP10.95□□□□□ -0.66
SNX1-202ENST00000380285 STRN4Q9NRL3 753 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 INSRP06213 1382 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 TTC31Q49AM3 519 aaPredicted RBP10.95□□□□□ -0.66
SNX1-202ENST00000380285 MSL1Q68DK7 614 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 GPATCH11Q8N954 259 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 PARD3Q8TEW0 1356 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 MATR3P43243 847 aaKnown RBP eCLIP10.95□□□□□ -0.66
SNX1-202ENST00000380285 CCDC40Q4G0X9 1142 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 TOM1L2Q6ZVM7 507 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 USP37Q86T82 979 aa10.95□□□□□ -0.66
SNX1-202ENST00000380285 TTC41PQ6P2S7 1318 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 GABPB1Q06547 395 aaPredicted RBP10.94□□□□□ -0.66
SNX1-202ENST00000380285 HDXQ7Z353 690 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 ESYT1Q9BSJ8 1104 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 KRT23Q9C075 422 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 IGHDP01880 384 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 C8orf34Q49A92 452 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 TBC1D5Q92609 795 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.94□□□□□ -0.66
SNX1-202ENST00000380285 TRAF1Q13077 416 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 GIMAP6Q6P9H5 292 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 EXOC1Q9NV70 894 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 ZMYM3Q14202 1370 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 CCDC129Q6ZRS4 1044 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 B4GALNT4Q76KP1 1039 aa10.94□□□□□ -0.66
SNX1-202ENST00000380285 TMCO5BA8MYB1 307 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms