RNA–Protein interactions for RNA: ENST00000376643.6

HDAC6-204, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 907 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-204ENST00000376643 NUP98P52948 1817 aa19.28■□□□□ 0.68
HDAC6-204ENST00000376643 DDX10Q13206 875 aaKnown RBP19.27■□□□□ 0.68
HDAC6-204ENST00000376643 PNMA8AQ86V59 439 aaPredicted RBP19.27■□□□□ 0.68
HDAC6-204ENST00000376643 SYNE4Q8N205 404 aa19.27■□□□□ 0.68
HDAC6-204ENST00000376643 UTP14AQ9BVJ6 771 aaKnown RBP19.27■□□□□ 0.68
HDAC6-204ENST00000376643 UBN2Q6ZU65 1347 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 SCN4AP35499 1836 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 NTSR2O95665 410 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 HOXB7P09629 217 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 HTRA3P83110 453 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 SUSD4Q5VX71 490 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 CREBZFQ9NS37 354 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 HACL1Q9UJ83 578 aa19.26■□□□□ 0.67
HDAC6-204ENST00000376643 EIF6P56537 245 aaKnown RBP19.25■□□□□ 0.67
HDAC6-204ENST00000376643 GPC2Q8N158 579 aa19.25■□□□□ 0.67
HDAC6-204ENST00000376643 VPS33BQ9H267 617 aa19.25■□□□□ 0.67
HDAC6-204ENST00000376643 TAF1DQ9H5J8 278 aaPredicted RBP19.25■□□□□ 0.67
HDAC6-204ENST00000376643 FZD9O00144 591 aa19.24■□□□□ 0.67
HDAC6-204ENST00000376643 PPEF1O14829 653 aaPredicted RBP19.24■□□□□ 0.67
HDAC6-204ENST00000376643 DDX21Q9NR30 783 aaKnown RBP eCLIP19.24■□□□□ 0.67
HDAC6-204ENST00000376643 CHL1O00533 1208 aa19.23■□□□□ 0.67
HDAC6-204ENST00000376643 PDIA6Q15084 440 aa19.23■□□□□ 0.67
HDAC6-204ENST00000376643 SLC10A5Q5PT55 438 aa19.23■□□□□ 0.67
HDAC6-204ENST00000376643 SUPT20HQ8NEM7 779 aa19.23■□□□□ 0.67
HDAC6-204ENST00000376643 LMOD1P29536 600 aaPredicted RBP19.22■□□□□ 0.67
HDAC6-204ENST00000376643 CALD1Q05682 793 aaKnown RBP19.22■□□□□ 0.67
HDAC6-204ENST00000376643 NEUROD2Q15784 382 aa19.22■□□□□ 0.67
HDAC6-204ENST00000376643 LRP10Q7Z4F1 713 aa19.22■□□□□ 0.67
HDAC6-204ENST00000376643 ZNF541Q9H0D2 1346 aa19.22■□□□□ 0.67
HDAC6-204ENST00000376643 EPHX2P34913 555 aa19.21■□□□□ 0.67
HDAC6-204ENST00000376643 COPS6Q7L5N1 327 aa19.21■□□□□ 0.67
HDAC6-204ENST00000376643 CCDC146Q8IYE0 955 aa19.21■□□□□ 0.67
HDAC6-204ENST00000376643 LARGE2Q8N3Y3 721 aa19.21■□□□□ 0.67
HDAC6-204ENST00000376643 CHMP4AQ9BY43 222 aa19.21■□□□□ 0.67
HDAC6-204ENST00000376643 SNED1Q8TER0 1413 aa19.2■□□□□ 0.66
HDAC6-204ENST00000376643 BBOX1O75936 387 aa19.2■□□□□ 0.66
HDAC6-204ENST00000376643 EAPPQ56P03 285 aaPredicted RBP19.2■□□□□ 0.66
HDAC6-204ENST00000376643 OLFM4Q6UX06 510 aa19.2■□□□□ 0.66
HDAC6-204ENST00000376643 TMC4Q7Z404 712 aa19.2■□□□□ 0.66
HDAC6-204ENST00000376643 XAGE3Q8WTP9 111 aa19.2■□□□□ 0.66
HDAC6-204ENST00000376643 LAS1LQ9Y4W2 734 aaKnown RBP19.2■□□□□ 0.66
HDAC6-204ENST00000376643 SH3TC1Q8TE82 1336 aa19.2■□□□□ 0.66
HDAC6-204ENST00000376643 AIMP1Q12904 312 aaKnown RBP19.19■□□□□ 0.66
HDAC6-204ENST00000376643 TCIRG1Q13488 830 aa19.19■□□□□ 0.66
HDAC6-204ENST00000376643 HDGFL1Q5TGJ6 251 aa19.19■□□□□ 0.66
HDAC6-204ENST00000376643 NIM1KQ8IY84 436 aa19.19■□□□□ 0.66
HDAC6-204ENST00000376643 DBF4Q9UBU7 674 aaPredicted RBP19.19■□□□□ 0.66
HDAC6-204ENST00000376643 CLEC11AQ9Y240 323 aa19.19■□□□□ 0.66
HDAC6-204ENST00000376643 ATP6V0A2Q9Y487 856 aa19.19■□□□□ 0.66
HDAC6-204ENST00000376643 DDX46Q7L014 1031 aaKnown RBP19.18■□□□□ 0.66
HDAC6-204ENST00000376643 CFAP44Q96MT7 982 aa19.18■□□□□ 0.66
HDAC6-204ENST00000376643 TRMT112Q9UI30 125 aaKnown RBP19.18■□□□□ 0.66
HDAC6-204ENST00000376643 HSP90B1P14625 803 aaKnown RBP19.17■□□□□ 0.66
HDAC6-204ENST00000376643 PROSER3Q2NL68 480 aa19.17■□□□□ 0.66
HDAC6-204ENST00000376643 NLRP10Q86W26 655 aa19.17■□□□□ 0.66
HDAC6-204ENST00000376643 PLBD2Q8NHP8 589 aa19.17■□□□□ 0.66
HDAC6-204ENST00000376643 HYPKQ9NX55 129 aa19.17■□□□□ 0.66
HDAC6-204ENST00000376643 PASKQ96RG2 1323 aa19.17■□□□□ 0.66
HDAC6-204ENST00000376643 TMEM88BA6NKF7 163 aa19.16■□□□□ 0.66
HDAC6-204ENST00000376643 PPIP5K2O43314 1243 aa19.16■□□□□ 0.66
HDAC6-204ENST00000376643 ANXA1P04083 346 aa19.16■□□□□ 0.66
HDAC6-204ENST00000376643 NECTIN2Q92692 538 aa19.16■□□□□ 0.66
HDAC6-204ENST00000376643 PRKRIP1Q9H875 184 aaPredicted RBP19.16■□□□□ 0.66
HDAC6-204ENST00000376643 ADAMTS8Q9UP79 889 aa19.16■□□□□ 0.66
HDAC6-204ENST00000376643 TRIM35Q9UPQ4 493 aa19.16■□□□□ 0.66
HDAC6-204ENST00000376643 POTEIP0CG38 1075 aa19.15■□□□□ 0.66
HDAC6-204ENST00000376643 POTEJP0CG39 1038 aa19.15■□□□□ 0.66
HDAC6-204ENST00000376643 SP8Q8IXZ3 490 aa19.15■□□□□ 0.66
HDAC6-204ENST00000376643 CHPF2Q9P2E5 772 aa19.15■□□□□ 0.66
HDAC6-204ENST00000376643 GJA3Q9Y6H8 435 aa19.15■□□□□ 0.66
HDAC6-204ENST00000376643 ABCC4O15439 1325 aa19.15■□□□□ 0.66
HDAC6-204ENST00000376643 ANKRD36CQ5JPF3 1778 aa19.14■□□□□ 0.66
HDAC6-204ENST00000376643 HSPA1AP0DMV8 641 aaKnown RBP19.14■□□□□ 0.65
HDAC6-204ENST00000376643 HSPA1BP0DMV9 641 aaKnown RBP19.14■□□□□ 0.65
HDAC6-204ENST00000376643 DPP8Q6V1X1 898 aaPredicted RBP19.14■□□□□ 0.65
HDAC6-204ENST00000376643 ANKRD13DQ6ZTN6 518 aa19.14■□□□□ 0.65
HDAC6-204ENST00000376643 RTFDC1Q9BY42 306 aaPredicted RBP19.14■□□□□ 0.65
HDAC6-204ENST00000376643 CNTNAP1P78357 1384 aa19.14■□□□□ 0.65
HDAC6-204ENST00000376643 TCERG1O14776 1098 aaKnown RBP19.13■□□□□ 0.65
HDAC6-204ENST00000376643 GNAI1P63096 354 aa19.13■□□□□ 0.65
HDAC6-204ENST00000376643 GRAPQ13588 217 aa19.13■□□□□ 0.65
HDAC6-204ENST00000376643 USP50Q70EL3 339 aaPredicted RBP19.13■□□□□ 0.65
HDAC6-204ENST00000376643 CNTROBQ8N137 903 aa19.13■□□□□ 0.65
HDAC6-204ENST00000376643 MPNDQ8N594 471 aa19.13■□□□□ 0.65
HDAC6-204ENST00000376643 GRAPLQ8TC17 118 aaPredicted RBP19.13■□□□□ 0.65
HDAC6-204ENST00000376643 IFT57Q9NWB7 429 aa19.13■□□□□ 0.65
HDAC6-204ENST00000376643 CDHR2Q9BYE9 1310 aa19.12■□□□□ 0.65
HDAC6-204ENST00000376643 DUSP27Q5VZP5 1158 aa19.12■□□□□ 0.65
HDAC6-204ENST00000376643 C3orf67Q6ZVT6 689 aa19.12■□□□□ 0.65
HDAC6-204ENST00000376643 MKRN1Q9UHC7 482 aaKnown RBP19.12■□□□□ 0.65
HDAC6-204ENST00000376643 ZNRF3Q9ULT6 936 aa19.12■□□□□ 0.65
HDAC6-204ENST00000376643 ITGBL1O95965 494 aaPredicted RBP19.11■□□□□ 0.65
HDAC6-204ENST00000376643 HCLS1P14317 486 aaPredicted RBP19.11■□□□□ 0.65
HDAC6-204ENST00000376643 GOLGA2Q08379 1002 aa19.11■□□□□ 0.65
HDAC6-204ENST00000376643 TRIM28Q13263 835 aaKnown RBP19.1■□□□□ 0.65
HDAC6-204ENST00000376643 TNIP1Q15025 636 aa19.1■□□□□ 0.65
HDAC6-204ENST00000376643 AOC3Q16853 763 aa19.1■□□□□ 0.65
HDAC6-204ENST00000376643 KRT24Q2M2I5 525 aa19.1■□□□□ 0.65
HDAC6-204ENST00000376643 AIDAQ96BJ3 306 aa19.1■□□□□ 0.65
HDAC6-204ENST00000376643 ADAMTSL1Q8N6G6 1762 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 349.7 ms