RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 RFX5P48382 616 aaPredicted RBP27.37■■□□□ 1.97
LDB1-201ENST00000361198 CASP7P55210 303 aa27.37■■□□□ 1.97
LDB1-201ENST00000361198 COPRSQ9NQ92 184 aa27.37■■□□□ 1.97
LDB1-201ENST00000361198 COL15A1P39059 1388 aa27.37■■□□□ 1.97
LDB1-201ENST00000361198 TNS2Q63HR2 1409 aa27.36■■□□□ 1.97
LDB1-201ENST00000361198 PTPN12Q05209 780 aaKnown RBP27.36■■□□□ 1.97
LDB1-201ENST00000361198 KLHL40Q2TBA0 621 aa27.36■■□□□ 1.97
LDB1-201ENST00000361198 TOGARAM1Q9Y4F4 1720 aa27.36■■□□□ 1.97
LDB1-201ENST00000361198 TMX3Q96JJ7 454 aa27.36■■□□□ 1.97
LDB1-201ENST00000361198 DIAPH3Q9NSV4 1193 aa27.36■■□□□ 1.97
LDB1-201ENST00000361198 EVI5LQ96CN4 794 aa27.35■■□□□ 1.97
LDB1-201ENST00000361198 UPF3BQ9BZI7 483 aaKnown RBP27.35■■□□□ 1.97
LDB1-201ENST00000361198 MCM2P49736 904 aa27.34■■□□□ 1.97
LDB1-201ENST00000361198 PKP1Q13835 747 aa27.34■■□□□ 1.97
LDB1-201ENST00000361198 TMOD3Q9NYL9 352 aa27.33■■□□□ 1.97
LDB1-201ENST00000361198 KIAA1211Q6ZU35 1233 aa27.33■■□□□ 1.97
LDB1-201ENST00000361198 NUP188Q5SRE5 1749 aa27.32■■□□□ 1.96
LDB1-201ENST00000361198 H7C1W4 665 aa27.32■■□□□ 1.96
LDB1-201ENST00000361198 RUFY2Q8WXA3 655 aa27.32■■□□□ 1.96
LDB1-201ENST00000361198 ZBTB3Q9H5J0 574 aa27.32■■□□□ 1.96
LDB1-201ENST00000361198 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.31■■□□□ 1.96
LDB1-201ENST00000361198 BOLA2Q9H3K6 86 aa27.3■■□□□ 1.96
LDB1-201ENST00000361198 SNX14Q9Y5W7 946 aa27.3■■□□□ 1.96
LDB1-201ENST00000361198 LMBR1LQ6UX01 489 aa27.3■■□□□ 1.96
LDB1-201ENST00000361198 NOL8Q76FK4 1167 aaKnown RBP27.3■■□□□ 1.96
LDB1-201ENST00000361198 CWC25Q9NXE8 425 aaPredicted RBP27.3■■□□□ 1.96
LDB1-201ENST00000361198 RASEFQ8IZ41 740 aa27.29■■□□□ 1.96
LDB1-201ENST00000361198 CLCN1P35523 988 aa27.29■■□□□ 1.96
LDB1-201ENST00000361198 FOXO4P98177 505 aa27.29■■□□□ 1.96
LDB1-201ENST00000361198 TFCP2Q12800 502 aa27.29■■□□□ 1.96
LDB1-201ENST00000361198 ASAP1Q9ULH1 1129 aa27.29■■□□□ 1.96
LDB1-201ENST00000361198 DDX49Q9Y6V7 483 aaKnown RBP27.29■■□□□ 1.96
LDB1-201ENST00000361198 CUL4AQ13619 759 aa27.28■■□□□ 1.96
LDB1-201ENST00000361198 PIGBQ92521 554 aa27.28■■□□□ 1.96
LDB1-201ENST00000361198 PTH1RQ03431 593 aa27.28■■□□□ 1.96
LDB1-201ENST00000361198 TNNI3KQ59H18 835 aa27.27■■□□□ 1.96
LDB1-201ENST00000361198 FPGT-TNNI3KV9GXZ4 949 aa27.27■■□□□ 1.96
LDB1-201ENST00000361198 DBNLQ9UJU6 430 aaKnown RBP27.27■■□□□ 1.96
LDB1-201ENST00000361198 CCDC191Q8NCU4 936 aa27.25■■□□□ 1.95
LDB1-201ENST00000361198 FAM227BQ96M60 508 aa27.25■■□□□ 1.95
LDB1-201ENST00000361198 LMBRD1Q9NUN5 540 aa27.25■■□□□ 1.95
LDB1-201ENST00000361198 ZDHHC9Q9Y397 364 aa27.25■■□□□ 1.95
LDB1-201ENST00000361198 TJP1Q07157 1748 aa27.25■■□□□ 1.95
LDB1-201ENST00000361198 CHMP3Q9Y3E7 222 aa27.25■■□□□ 1.95
LDB1-201ENST00000361198 MCTP1Q6DN14 999 aa27.24■■□□□ 1.95
LDB1-201ENST00000361198 ROBO1Q9Y6N7 1651 aa27.24■■□□□ 1.95
LDB1-201ENST00000361198 NMIQ13287 307 aaPredicted RBP27.24■■□□□ 1.95
LDB1-201ENST00000361198 HIP1O00291 1037 aa27.23■■□□□ 1.95
LDB1-201ENST00000361198 DNAJC10Q8IXB1 793 aa27.23■■□□□ 1.95
LDB1-201ENST00000361198 ATG3Q9NT62 314 aa27.23■■□□□ 1.95
LDB1-201ENST00000361198 COL14A1Q05707 1796 aaKnown RBP27.23■■□□□ 1.95
LDB1-201ENST00000361198 KAT6BQ8WYB5 2073 aa27.23■■□□□ 1.95
LDB1-201ENST00000361198 DISP2A7MBM2 1401 aa27.23■■□□□ 1.95
LDB1-201ENST00000361198 FSD1Q9BTV5 496 aa27.23■■□□□ 1.95
LDB1-201ENST00000361198 ZNF330Q9Y3S2 320 aaPredicted RBP27.23■■□□□ 1.95
LDB1-201ENST00000361198 ZNF445P59923 1031 aa27.22■■□□□ 1.95
LDB1-201ENST00000361198 INTS4Q96HW7 963 aaKnown RBP27.22■■□□□ 1.95
LDB1-201ENST00000361198 ITGB4P16144 1822 aa27.22■■□□□ 1.95
LDB1-201ENST00000361198 TTC14Q96N46 770 aa27.21■■□□□ 1.95
LDB1-201ENST00000361198 ATP5JP18859 108 aa27.21■■□□□ 1.95
LDB1-201ENST00000361198 VSIG10Q8N0Z9 540 aa27.21■■□□□ 1.95
LDB1-201ENST00000361198 EDC3Q96F86 508 aaKnown RBP27.21■■□□□ 1.95
LDB1-201ENST00000361198 CCDC171Q6TFL3 1326 aa27.21■■□□□ 1.95
LDB1-201ENST00000361198 A0A0D9SFI3 127 aa27.2■■□□□ 1.94
LDB1-201ENST00000361198 PRPF40BQ6NWY9 871 aaKnown RBP27.2■■□□□ 1.94
LDB1-201ENST00000361198 DBNDD2Q9BQY9 259 aa27.2■■□□□ 1.94
LDB1-201ENST00000361198 TEX13AQ9BXU3 409 aaPredicted RBP27.2■■□□□ 1.94
LDB1-201ENST00000361198 ISCA1Q9BUE6 129 aa27.19■■□□□ 1.94
LDB1-201ENST00000361198 ATG9AQ7Z3C6 839 aa27.19■■□□□ 1.94
LDB1-201ENST00000361198 SNRKQ9NRH2 765 aa27.19■■□□□ 1.94
LDB1-201ENST00000361198 TCIRG1Q13488 830 aa27.18■■□□□ 1.94
LDB1-201ENST00000361198 NECTIN1Q15223 517 aa27.18■■□□□ 1.94
LDB1-201ENST00000361198 ESPNB1AK53 854 aa27.18■■□□□ 1.94
LDB1-201ENST00000361198 KCNB2Q92953 911 aa27.18■■□□□ 1.94
LDB1-201ENST00000361198 COL16A1Q07092 1604 aaPredicted RBP27.18■■□□□ 1.94
LDB1-201ENST00000361198 CPA1P15085 419 aa27.17■■□□□ 1.94
LDB1-201ENST00000361198 CASTP20810 708 aaKnown RBP27.17■■□□□ 1.94
LDB1-201ENST00000361198 AK2P54819 239 aa27.17■■□□□ 1.94
LDB1-201ENST00000361198 ADCK5Q3MIX3 580 aa27.17■■□□□ 1.94
LDB1-201ENST00000361198 MAP4K1Q92918 833 aa27.17■■□□□ 1.94
LDB1-201ENST00000361198 NDUFB9Q9Y6M9 179 aa27.17■■□□□ 1.94
LDB1-201ENST00000361198 PPP1R9BQ96SB3 815 aa27.16■■□□□ 1.94
LDB1-201ENST00000361198 RBM8AQ9Y5S9 174 aaKnown RBP27.16■■□□□ 1.94
LDB1-201ENST00000361198 AHDC1Q5TGY3 1603 aaPredicted RBP27.16■■□□□ 1.94
LDB1-201ENST00000361198 STARD3NLO95772 234 aa27.16■■□□□ 1.94
LDB1-201ENST00000361198 BCL9O00512 1426 aa27.15■■□□□ 1.94
LDB1-201ENST00000361198 COL22A1Q8NFW1 1626 aaPredicted RBP27.15■■□□□ 1.94
LDB1-201ENST00000361198 EXOC5O00471 708 aa27.15■■□□□ 1.94
LDB1-201ENST00000361198 NASPP49321 788 aaPredicted RBP27.15■■□□□ 1.94
LDB1-201ENST00000361198 ZNF594Q96JF6 807 aaPredicted RBP27.15■■□□□ 1.94
LDB1-201ENST00000361198 MED23Q9ULK4 1368 aa27.14■■□□□ 1.94
LDB1-201ENST00000361198 CCDC173Q0VFZ6 552 aa27.14■■□□□ 1.94
LDB1-201ENST00000361198 TRIM44Q96DX7 344 aaPredicted RBP27.14■■□□□ 1.94
LDB1-201ENST00000361198 JAKMIP1Q96N16 626 aaKnown RBP27.14■■□□□ 1.94
LDB1-201ENST00000361198 SLC4A9Q96Q91 983 aa27.14■■□□□ 1.94
LDB1-201ENST00000361198 LARP6Q9BRS8 491 aaKnown RBP27.14■■□□□ 1.94
LDB1-201ENST00000361198 ZSCAN23Q3MJ62 389 aa27.14■■□□□ 1.93
LDB1-201ENST00000361198 FOXD4L5Q5VV16 416 aaPredicted RBP27.14■■□□□ 1.93
LDB1-201ENST00000361198 RUFY3Q7L099 469 aa27.14■■□□□ 1.93
LDB1-201ENST00000361198 FOXD4L4Q8WXT5 416 aaPredicted RBP27.14■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms