RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 SBF1O95248 1867 aa21.77■■□□□ 1.07
CLN3-203ENST00000357806 NUTM1Q86Y26 1132 aa21.77■■□□□ 1.07
CLN3-203ENST00000357806 MYH3P11055 1940 aa21.76■■□□□ 1.07
CLN3-203ENST00000357806 SLC4A2P04920 1241 aa21.76■■□□□ 1.07
CLN3-203ENST00000357806 NLRP10Q86W26 655 aa21.76■■□□□ 1.07
CLN3-203ENST00000357806 UTP14AQ9BVJ6 771 aaKnown RBP21.76■■□□□ 1.07
CLN3-203ENST00000357806 FER1L6Q2WGJ9 1857 aa21.75■■□□□ 1.07
CLN3-203ENST00000357806 ERFEQ4G0M1 354 aa21.75■■□□□ 1.07
CLN3-203ENST00000357806 TTLL6Q8N841 843 aa21.74■■□□□ 1.07
CLN3-203ENST00000357806 ZNF622Q969S3 477 aaKnown RBP eCLIP21.74■■□□□ 1.07
CLN3-203ENST00000357806 CDCA7LQ96GN5 454 aa21.74■■□□□ 1.07
CLN3-203ENST00000357806 ISCA1Q9BUE6 129 aa21.74■■□□□ 1.07
CLN3-203ENST00000357806 SRGNP10124 158 aa21.73■■□□□ 1.07
CLN3-203ENST00000357806 HNRNPUQ00839 825 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLN3-203ENST00000357806 MASTLQ96GX5 879 aa21.73■■□□□ 1.07
CLN3-203ENST00000357806 KLRG2A4D1S0 409 aaPredicted RBP21.72■■□□□ 1.07
CLN3-203ENST00000357806 ATP5J2-PTCD1G3V325 749 aa21.72■■□□□ 1.07
CLN3-203ENST00000357806 FLIIQ13045 1269 aa21.72■■□□□ 1.07
CLN3-203ENST00000357806 STYK1Q6J9G0 422 aa21.72■■□□□ 1.07
CLN3-203ENST00000357806 G2E3Q7L622 706 aa21.72■■□□□ 1.07
CLN3-203ENST00000357806 ADCY9O60503 1353 aa21.72■■□□□ 1.07
CLN3-203ENST00000357806 KSR2Q6VAB6 950 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 MYD88Q99836 296 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 TRMT112Q9UI30 125 aaKnown RBP21.71■■□□□ 1.07
CLN3-203ENST00000357806 MAP3K2Q9Y2U5 619 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 PI4KAP2A4QPH2 592 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 NPR1P16066 1061 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 YY1P25490 414 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 TRIM28Q13263 835 aaKnown RBP21.71■■□□□ 1.07
CLN3-203ENST00000357806 TRMT2AQ8IZ69 625 aaKnown RBP21.71■■□□□ 1.07
CLN3-203ENST00000357806 PI4KAP1Q8N8J0 262 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 CNKSR1Q969H4 720 aa21.71■■□□□ 1.07
CLN3-203ENST00000357806 METTL22Q9BUU2 404 aaPredicted RBP21.71■■□□□ 1.07
CLN3-203ENST00000357806 SH3TC1Q8TE82 1336 aa21.7■■□□□ 1.06
CLN3-203ENST00000357806 DICER1Q9UPY3 1922 aaKnown RBP21.7■■□□□ 1.06
CLN3-203ENST00000357806 FKBP5Q13451 457 aaPredicted RBP21.7■■□□□ 1.06
CLN3-203ENST00000357806 TAF1P21675 1872 aa21.7■■□□□ 1.06
CLN3-203ENST00000357806 CRY2Q49AN0 593 aa21.69■■□□□ 1.06
CLN3-203ENST00000357806 NEXNQ0ZGT2 675 aa21.68■■□□□ 1.06
CLN3-203ENST00000357806 SLC10A5Q5PT55 438 aa21.68■■□□□ 1.06
CLN3-203ENST00000357806 ZNF428Q96B54 188 aa21.68■■□□□ 1.06
CLN3-203ENST00000357806 TIAM2Q8IVF5 1701 aa21.68■■□□□ 1.06
CLN3-203ENST00000357806 PRPF40BQ6NWY9 871 aaKnown RBP21.67■■□□□ 1.06
CLN3-203ENST00000357806 ARHGAP27Q6ZUM4 889 aa21.67■■□□□ 1.06
CLN3-203ENST00000357806 CCDC191Q8NCU4 936 aa21.67■■□□□ 1.06
CLN3-203ENST00000357806 RPGRQ92834 1020 aaKnown RBP21.67■■□□□ 1.06
CLN3-203ENST00000357806 NLRP3Q96P20 1036 aa21.67■■□□□ 1.06
CLN3-203ENST00000357806 CWC25Q9NXE8 425 aaPredicted RBP21.66■■□□□ 1.06
CLN3-203ENST00000357806 CT47B1P0C2W7 299 aaPredicted RBP21.65■■□□□ 1.06
CLN3-203ENST00000357806 ALDH1B1P30837 517 aa21.65■■□□□ 1.06
CLN3-203ENST00000357806 DNAAF4Q8WXU2 420 aa21.64■■□□□ 1.06
CLN3-203ENST00000357806 FAM89AQ96GI7 184 aa21.64■■□□□ 1.06
CLN3-203ENST00000357806 HCLS1P14317 486 aaPredicted RBP21.64■■□□□ 1.05
CLN3-203ENST00000357806 SYNE4Q8N205 404 aa21.64■■□□□ 1.05
CLN3-203ENST00000357806 ZBTB38Q8NAP3 1195 aaPredicted RBP21.64■■□□□ 1.05
CLN3-203ENST00000357806 ZBED9Q6R2W3 1325 aa21.63■■□□□ 1.05
CLN3-203ENST00000357806 C21orf2O43822 256 aa21.63■■□□□ 1.05
CLN3-203ENST00000357806 IGKV5-2P06315 115 aa21.63■■□□□ 1.05
CLN3-203ENST00000357806 SOGA3Q5TF21 947 aa21.63■■□□□ 1.05
CLN3-203ENST00000357806 C3orf67Q6ZVT6 689 aa21.63■■□□□ 1.05
CLN3-203ENST00000357806 RBM17Q96I25 401 aaKnown RBP21.63■■□□□ 1.05
CLN3-203ENST00000357806 SPEF2Q9C093 1822 aa21.63■■□□□ 1.05
CLN3-203ENST00000357806 HSP90B1P14625 803 aaKnown RBP21.62■■□□□ 1.05
CLN3-203ENST00000357806 HOXA10P31260 410 aaPredicted RBP21.62■■□□□ 1.05
CLN3-203ENST00000357806 ALDH1L2Q3SY69 923 aa21.62■■□□□ 1.05
CLN3-203ENST00000357806 RTL5Q5HYW3 569 aaPredicted RBP21.62■■□□□ 1.05
CLN3-203ENST00000357806 ZNF219Q9P2Y4 722 aaPredicted RBP21.62■■□□□ 1.05
CLN3-203ENST00000357806 LRRC37AA6NMS7 1700 aa21.61■■□□□ 1.05
CLN3-203ENST00000357806 NEURL1BA8MQ27 555 aa21.61■■□□□ 1.05
CLN3-203ENST00000357806 PCCAP05165 728 aaPredicted RBP21.61■■□□□ 1.05
CLN3-203ENST00000357806 CWF19L2Q2TBE0 894 aaKnown RBP21.61■■□□□ 1.05
CLN3-203ENST00000357806 MRPL50Q8N5N7 158 aaKnown RBP21.61■■□□□ 1.05
CLN3-203ENST00000357806 IRS4O14654 1257 aaPredicted RBP21.6■■□□□ 1.05
CLN3-203ENST00000357806 SSH1Q8WYL5 1049 aa21.6■■□□□ 1.05
CLN3-203ENST00000357806 CRAMP1Q96RY5 1269 aa21.6■■□□□ 1.05
CLN3-203ENST00000357806 LINS1Q8NG48 757 aa21.59■■□□□ 1.05
CLN3-203ENST00000357806 PTPRCP08575 1304 aa21.58■■□□□ 1.05
CLN3-203ENST00000357806 CDHR2Q9BYE9 1310 aa21.58■■□□□ 1.05
CLN3-203ENST00000357806 F6X3S4 739 aa21.58■■□□□ 1.05
CLN3-203ENST00000357806 RASSF7Q02833 373 aa21.58■■□□□ 1.05
CLN3-203ENST00000357806 BCL2L13Q9BXK5 485 aa21.58■■□□□ 1.05
CLN3-203ENST00000357806 SMC4Q9NTJ3 1288 aa21.58■■□□□ 1.05
CLN3-203ENST00000357806 ABCC4O15439 1325 aa21.58■■□□□ 1.04
CLN3-203ENST00000357806 CCDC93Q567U6 631 aa21.58■■□□□ 1.04
CLN3-203ENST00000357806 NFKBIEO00221 500 aa21.57■■□□□ 1.04
CLN3-203ENST00000357806 DDX46Q7L014 1031 aaKnown RBP21.57■■□□□ 1.04
CLN3-203ENST00000357806 C7orf43Q8WVR3 580 aa21.57■■□□□ 1.04
CLN3-203ENST00000357806 LTBP3Q9NS15 1303 aa21.56■■□□□ 1.04
CLN3-203ENST00000357806 PPEF1O14829 653 aaPredicted RBP21.56■■□□□ 1.04
CLN3-203ENST00000357806 GCKRQ14397 625 aa21.56■■□□□ 1.04
CLN3-203ENST00000357806 SF3B3Q15393 1217 aaKnown RBP21.56■■□□□ 1.04
CLN3-203ENST00000357806 PDE8AO60658 829 aa21.55■■□□□ 1.04
CLN3-203ENST00000357806 BEND3Q5T5X7 828 aa21.55■■□□□ 1.04
CLN3-203ENST00000357806 TAOK3Q9H2K8 898 aa21.55■■□□□ 1.04
CLN3-203ENST00000357806 LMNB1P20700 586 aa21.54■■□□□ 1.04
CLN3-203ENST00000357806 C9orf131Q5VYM1 1079 aa21.54■■□□□ 1.04
CLN3-203ENST00000357806 SLC4A10Q6U841 1118 aa21.54■■□□□ 1.04
CLN3-203ENST00000357806 UBE3BQ7Z3V4 1068 aa21.54■■□□□ 1.04
CLN3-203ENST00000357806 JARID2Q92833 1246 aaPredicted RBP21.54■■□□□ 1.04
CLN3-203ENST00000357806 RNF181Q9P0P0 153 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms