RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 CCDC146Q8IYE0 955 aa18.98■□□□□ 0.63
PRPF40A-201ENST00000354363 RPGRQ92834 1020 aaKnown RBP18.98■□□□□ 0.63
PRPF40A-201ENST00000354363 PCNTO95613 3336 aa18.98■□□□□ 0.63
PRPF40A-201ENST00000354363 LAMB2P55268 1798 aa18.98■□□□□ 0.63
PRPF40A-201ENST00000354363 IQCA1LA6NCM1 817 aa18.97■□□□□ 0.63
PRPF40A-201ENST00000354363 ANXA1P04083 346 aa18.97■□□□□ 0.63
PRPF40A-201ENST00000354363 PPP1R42Q7Z4L9 355 aa18.96■□□□□ 0.63
PRPF40A-201ENST00000354363 PSMD1Q99460 953 aa18.96■□□□□ 0.63
PRPF40A-201ENST00000354363 FZD9O00144 591 aa18.96■□□□□ 0.63
PRPF40A-201ENST00000354363 NEUROD2Q15784 382 aa18.96■□□□□ 0.63
PRPF40A-201ENST00000354363 PARP10Q53GL7 1025 aa18.96■□□□□ 0.63
PRPF40A-201ENST00000354363 CC2D2BQ6DHV5 1058 aa18.96■□□□□ 0.63
PRPF40A-201ENST00000354363 TAF1DQ9H5J8 278 aaPredicted RBP18.96■□□□□ 0.63
PRPF40A-201ENST00000354363 C3orf67Q6ZVT6 689 aa18.95■□□□□ 0.62
PRPF40A-201ENST00000354363 RBM17Q96I25 401 aaKnown RBP18.95■□□□□ 0.62
PRPF40A-201ENST00000354363 CRAMP1Q96RY5 1269 aa18.95■□□□□ 0.62
PRPF40A-201ENST00000354363 ADAMTSL1Q8N6G6 1762 aa18.94■□□□□ 0.62
PRPF40A-201ENST00000354363 NECTIN2Q92692 538 aa18.94■□□□□ 0.62
PRPF40A-201ENST00000354363 RUNDC1Q96C34 613 aa18.94■□□□□ 0.62
PRPF40A-201ENST00000354363 COL4A5P29400 1685 aa18.94■□□□□ 0.62
PRPF40A-201ENST00000354363 CHL1O00533 1208 aa18.93■□□□□ 0.62
PRPF40A-201ENST00000354363 LDHDQ86WU2 507 aa18.93■□□□□ 0.62
PRPF40A-201ENST00000354363 TRIM35Q9UPQ4 493 aa18.93■□□□□ 0.62
PRPF40A-201ENST00000354363 WDR43Q15061 677 aaKnown RBP eCLIP18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 COPS6Q7L5N1 327 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 SLC51AQ86UW1 340 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 XAGE3Q8WTP9 111 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 UTP14AQ9BVJ6 771 aaKnown RBP18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 HACL1Q9UJ83 578 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 PPEF1O14829 653 aaPredicted RBP18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 KRT24Q2M2I5 525 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 GRIPAP1Q4V328 841 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 SLC10A5Q5PT55 438 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 JDP2Q8WYK2 163 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 NLRP3Q96P20 1036 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 CREBZFQ9NS37 354 aa18.92■□□□□ 0.62
PRPF40A-201ENST00000354363 TAF1P21675 1872 aa18.91■□□□□ 0.62
PRPF40A-201ENST00000354363 AIMP1Q12904 312 aaKnown RBP18.91■□□□□ 0.62
PRPF40A-201ENST00000354363 DDX21Q9NR30 783 aaKnown RBP eCLIP18.91■□□□□ 0.62
PRPF40A-201ENST00000354363 ADAMTS8Q9UP79 889 aa18.91■□□□□ 0.62
PRPF40A-201ENST00000354363 LAS1LQ9Y4W2 734 aaKnown RBP18.91■□□□□ 0.62
PRPF40A-201ENST00000354363 RNF123Q5XPI4 1314 aa18.91■□□□□ 0.62
PRPF40A-201ENST00000354363 PASKQ96RG2 1323 aa18.91■□□□□ 0.62
PRPF40A-201ENST00000354363 TCERG1O14776 1098 aaKnown RBP18.9■□□□□ 0.62
PRPF40A-201ENST00000354363 EAPPQ56P03 285 aaPredicted RBP18.9■□□□□ 0.62
PRPF40A-201ENST00000354363 HSP90AB3PQ58FF7 597 aa18.9■□□□□ 0.62
PRPF40A-201ENST00000354363 GPC2Q8N158 579 aa18.9■□□□□ 0.62
PRPF40A-201ENST00000354363 LTBP1Q14766 1721 aa18.89■□□□□ 0.62
PRPF40A-201ENST00000354363 EPHX2P34913 555 aa18.89■□□□□ 0.62
PRPF40A-201ENST00000354363 NLRP10Q86W26 655 aa18.89■□□□□ 0.62
PRPF40A-201ENST00000354363 TCIRG1Q13488 830 aa18.89■□□□□ 0.61
PRPF40A-201ENST00000354363 COL13A1Q5TAT6 717 aaPredicted RBP18.89■□□□□ 0.61
PRPF40A-201ENST00000354363 ITGBL1O95965 494 aaPredicted RBP18.88■□□□□ 0.61
PRPF40A-201ENST00000354363 HSPA1AP0DMV8 641 aaKnown RBP18.88■□□□□ 0.61
PRPF40A-201ENST00000354363 HSPA1BP0DMV9 641 aaKnown RBP18.88■□□□□ 0.61
PRPF40A-201ENST00000354363 EIF6P56537 245 aaKnown RBP18.88■□□□□ 0.61
PRPF40A-201ENST00000354363 LARGE2Q8N3Y3 721 aa18.88■□□□□ 0.61
PRPF40A-201ENST00000354363 DDX60Q8IY21 1712 aaKnown RBP18.88■□□□□ 0.61
PRPF40A-201ENST00000354363 ABCC4O15439 1325 aa18.88■□□□□ 0.61
PRPF40A-201ENST00000354363 PNMA8AQ86V59 439 aaPredicted RBP18.87■□□□□ 0.61
PRPF40A-201ENST00000354363 CHPF2Q9P2E5 772 aa18.87■□□□□ 0.61
PRPF40A-201ENST00000354363 MKRN1Q9UHC7 482 aaKnown RBP18.87■□□□□ 0.61
PRPF40A-201ENST00000354363 CLEC11AQ9Y240 323 aa18.87■□□□□ 0.61
PRPF40A-201ENST00000354363 ATP6V0A2Q9Y487 856 aa18.87■□□□□ 0.61
PRPF40A-201ENST00000354363 HOXB7P09629 217 aa18.86■□□□□ 0.61
PRPF40A-201ENST00000354363 HCLS1P14317 486 aaPredicted RBP18.86■□□□□ 0.61
PRPF40A-201ENST00000354363 PRKRIP1Q9H875 184 aaPredicted RBP18.86■□□□□ 0.61
PRPF40A-201ENST00000354363 GJA3Q9Y6H8 435 aa18.86■□□□□ 0.61
PRPF40A-201ENST00000354363 HDGFL1Q5TGJ6 251 aa18.85■□□□□ 0.61
PRPF40A-201ENST00000354363 TRMT112Q9UI30 125 aaKnown RBP18.85■□□□□ 0.61
PRPF40A-201ENST00000354363 CFAP44Q96MT7 982 aa18.85■□□□□ 0.61
PRPF40A-201ENST00000354363 TMX4Q9H1E5 349 aaPredicted RBP18.85■□□□□ 0.61
PRPF40A-201ENST00000354363 SH3TC1Q8TE82 1336 aa18.85■□□□□ 0.61
PRPF40A-201ENST00000354363 CNTNAP1P78357 1384 aa18.84■□□□□ 0.61
PRPF40A-201ENST00000354363 PPIP5K2O43314 1243 aa18.84■□□□□ 0.61
PRPF40A-201ENST00000354363 NIM1KQ8IY84 436 aa18.84■□□□□ 0.61
PRPF40A-201ENST00000354363 TMEM88BA6NKF7 163 aa18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 BBOX1O75936 387 aa18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 SCNN1DP51172 638 aa18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 AOC3Q16853 763 aa18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 MAP1SQ66K74 1059 aaPredicted RBP18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 CNTROBQ8N137 903 aa18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 PLBD2Q8NHP8 589 aa18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 VPS33BQ9H267 617 aa18.83■□□□□ 0.61
PRPF40A-201ENST00000354363 TRPM7Q96QT4 1865 aa18.83■□□□□ 0.6
PRPF40A-201ENST00000354363 LMOD1P29536 600 aaPredicted RBP18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 DUSP27Q5VZP5 1158 aa18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 ANKRD13DQ6ZTN6 518 aa18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 SP8Q8IXZ3 490 aa18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 ZNF428Q96B54 188 aa18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 RTFDC1Q9BY42 306 aaPredicted RBP18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 MBIPQ9NS73 344 aa18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 DBF4Q9UBU7 674 aaPredicted RBP18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 LRRC37AA6NMS7 1700 aa18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 DDX46Q7L014 1031 aaKnown RBP18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 SUPT20HQ8NEM7 779 aa18.82■□□□□ 0.6
PRPF40A-201ENST00000354363 EPS15P42566 896 aa18.81■□□□□ 0.6
PRPF40A-201ENST00000354363 GRAPQ13588 217 aa18.81■□□□□ 0.6
PRPF40A-201ENST00000354363 GRAPLQ8TC17 118 aaPredicted RBP18.81■□□□□ 0.6
PRPF40A-201ENST00000354363 ISCA1Q9BUE6 129 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms