RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 RGL2O15211 777 aa23.94■■□□□ 1.42
CHMP4A-201ENST00000347519 PDGFDQ9GZP0 370 aaPredicted RBP23.94■■□□□ 1.42
CHMP4A-201ENST00000347519 NIP7Q9Y221 180 aaKnown RBP eCLIP23.94■■□□□ 1.42
CHMP4A-201ENST00000347519 COL24A1Q17RW2 1714 aa23.94■■□□□ 1.42
CHMP4A-201ENST00000347519 GRM8O00222 908 aa23.93■■□□□ 1.42
CHMP4A-201ENST00000347519 MSH5O43196 834 aa23.93■■□□□ 1.42
CHMP4A-201ENST00000347519 CASP7P55210 303 aa23.93■■□□□ 1.42
CHMP4A-201ENST00000347519 BICDL1Q6ZP65 573 aa23.93■■□□□ 1.42
CHMP4A-201ENST00000347519 FLAD1Q8NFF5 587 aa23.93■■□□□ 1.42
CHMP4A-201ENST00000347519 UTYO14607 1347 aa23.93■■□□□ 1.42
CHMP4A-201ENST00000347519 SUSD4Q5VX71 490 aa23.92■■□□□ 1.42
CHMP4A-201ENST00000347519 C9orf78Q9NZ63 289 aaPredicted RBP23.92■■□□□ 1.42
CHMP4A-201ENST00000347519 H7C1W4 665 aa23.91■■□□□ 1.42
CHMP4A-201ENST00000347519 RTL5Q5HYW3 569 aaPredicted RBP23.91■■□□□ 1.42
CHMP4A-201ENST00000347519 SYNE4Q8N205 404 aa23.91■■□□□ 1.42
CHMP4A-201ENST00000347519 PCDHB15Q9Y5E8 787 aa23.91■■□□□ 1.42
CHMP4A-201ENST00000347519 FAM177BA6PVY3 158 aa23.91■■□□□ 1.42
CHMP4A-201ENST00000347519 NFIXQ14938 502 aa23.91■■□□□ 1.42
CHMP4A-201ENST00000347519 GNAI3P08754 354 aa23.9■■□□□ 1.42
CHMP4A-201ENST00000347519 UBTFL1P0CB47 393 aaPredicted RBP23.9■■□□□ 1.42
CHMP4A-201ENST00000347519 ERICH6BQ5W0A0 696 aa23.9■■□□□ 1.42
CHMP4A-201ENST00000347519 UBE3BQ7Z3V4 1068 aa23.9■■□□□ 1.42
CHMP4A-201ENST00000347519 KAZALD1Q96I82 304 aa23.9■■□□□ 1.42
CHMP4A-201ENST00000347519 SUCLG2Q96I99 432 aa23.9■■□□□ 1.42
CHMP4A-201ENST00000347519 LRRFIP2Q9Y608 721 aaKnown RBP23.9■■□□□ 1.42
CHMP4A-201ENST00000347519 PSDA5PKW4 1024 aaPredicted RBP23.89■■□□□ 1.41
CHMP4A-201ENST00000347519 FAM89AQ96GI7 184 aa23.89■■□□□ 1.41
CHMP4A-201ENST00000347519 LRP5O75197 1615 aa23.88■■□□□ 1.41
CHMP4A-201ENST00000347519 NTSR2O95665 410 aa23.88■■□□□ 1.41
CHMP4A-201ENST00000347519 PCCAP05165 728 aaPredicted RBP23.88■■□□□ 1.41
CHMP4A-201ENST00000347519 TM4SF1P30408 202 aa23.88■■□□□ 1.41
CHMP4A-201ENST00000347519 PARP10Q53GL7 1025 aa23.88■■□□□ 1.41
CHMP4A-201ENST00000347519 GNAI2P04899 355 aa23.87■■□□□ 1.41
CHMP4A-201ENST00000347519 EPHA10Q5JZY3 1008 aa23.87■■□□□ 1.41
CHMP4A-201ENST00000347519 MSL1Q68DK7 614 aa23.87■■□□□ 1.41
CHMP4A-201ENST00000347519 SETDB2Q96T68 719 aa23.87■■□□□ 1.41
CHMP4A-201ENST00000347519 CHMP4BQ9H444 224 aaKnown RBP23.87■■□□□ 1.41
CHMP4A-201ENST00000347519 TRMT112Q9UI30 125 aaKnown RBP23.87■■□□□ 1.41
CHMP4A-201ENST00000347519 CASZ1Q86V15 1759 aa23.87■■□□□ 1.41
CHMP4A-201ENST00000347519 DDR1Q08345 913 aa23.86■■□□□ 1.41
CHMP4A-201ENST00000347519 ZBTB38Q8NAP3 1195 aaPredicted RBP23.86■■□□□ 1.41
CHMP4A-201ENST00000347519 UTP14AQ9BVJ6 771 aaKnown RBP23.86■■□□□ 1.41
CHMP4A-201ENST00000347519 DDX60Q8IY21 1712 aaKnown RBP23.86■■□□□ 1.41
CHMP4A-201ENST00000347519 AAMPQ13685 434 aa23.85■■□□□ 1.41
CHMP4A-201ENST00000347519 R3HDM1Q15032 1099 aaKnown RBP23.84■■□□□ 1.41
CHMP4A-201ENST00000347519 NUTM1Q86Y26 1132 aa23.84■■□□□ 1.41
CHMP4A-201ENST00000347519 SIRT2Q8IXJ6 389 aa23.84■■□□□ 1.41
CHMP4A-201ENST00000347519 PPP4R2Q9NY27 417 aa23.84■■□□□ 1.41
CHMP4A-201ENST00000347519 CEP85Q6P2H3 762 aa23.83■■□□□ 1.41
CHMP4A-201ENST00000347519 PPP1R42Q7Z4L9 355 aa23.83■■□□□ 1.41
CHMP4A-201ENST00000347519 LAMB2P55268 1798 aa23.83■■□□□ 1.4
CHMP4A-201ENST00000347519 CDHR2Q9BYE9 1310 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 FOXO4P98177 505 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 ERFEQ4G0M1 354 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 B4GALNT3Q6L9W6 998 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 NLGN1Q8N2Q7 840 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 ANKRD44Q8N8A2 993 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 BICC1Q9H694 974 aaKnown RBP23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 CARMIL3Q8ND23 1372 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 SH3TC1Q8TE82 1336 aa23.82■■□□□ 1.4
CHMP4A-201ENST00000347519 POLRMTO00411 1230 aaKnown RBP23.81■■□□□ 1.4
CHMP4A-201ENST00000347519 CCDC24Q8N4L8 307 aa23.81■■□□□ 1.4
CHMP4A-201ENST00000347519 ABCC12Q96J65 1359 aa23.81■■□□□ 1.4
CHMP4A-201ENST00000347519 IRS4O14654 1257 aaPredicted RBP23.8■■□□□ 1.4
CHMP4A-201ENST00000347519 HCLS1P14317 486 aaPredicted RBP23.8■■□□□ 1.4
CHMP4A-201ENST00000347519 NBPF5PQ86XG9 351 aaPredicted RBP23.8■■□□□ 1.4
CHMP4A-201ENST00000347519 MYH3P11055 1940 aa23.8■■□□□ 1.4
CHMP4A-201ENST00000347519 NRXN2Q9P2S2 1712 aa23.8■■□□□ 1.4
CHMP4A-201ENST00000347519 PNMA6EA0A0J9YXQ4 647 aa23.79■■□□□ 1.4
CHMP4A-201ENST00000347519 IGHDP01880 384 aa23.79■■□□□ 1.4
CHMP4A-201ENST00000347519 SERPINB2P05120 415 aa23.79■■□□□ 1.4
CHMP4A-201ENST00000347519 MMP10P09238 476 aa23.78■■□□□ 1.4
CHMP4A-201ENST00000347519 ATP8B2P98198 1209 aa23.78■■□□□ 1.4
CHMP4A-201ENST00000347519 PLA2G12BQ9BX93 195 aa23.78■■□□□ 1.4
CHMP4A-201ENST00000347519 TNRC6CQ9HCJ0 1690 aaKnown RBP23.78■■□□□ 1.4
CHMP4A-201ENST00000347519 RABL6Q3YEC7 729 aaPredicted RBP23.78■■□□□ 1.4
CHMP4A-201ENST00000347519 NYXQ9GZU5 481 aa23.78■■□□□ 1.4
CHMP4A-201ENST00000347519 PRR5LQ6MZQ0 368 aa23.77■■□□□ 1.4
CHMP4A-201ENST00000347519 TPTE2Q6XPS3 522 aa23.77■■□□□ 1.4
CHMP4A-201ENST00000347519 C3orf67Q6ZVT6 689 aa23.77■■□□□ 1.4
CHMP4A-201ENST00000347519 RPAP2Q8IXW5 612 aaPredicted RBP23.77■■□□□ 1.4
CHMP4A-201ENST00000347519 SLC10A5Q5PT55 438 aa23.76■■□□□ 1.39
CHMP4A-201ENST00000347519 LMBR1LQ6UX01 489 aa23.76■■□□□ 1.39
CHMP4A-201ENST00000347519 CCDC136Q96JN2 1154 aa23.76■■□□□ 1.39
CHMP4A-201ENST00000347519 HDAC5Q9UQL6 1122 aa23.76■■□□□ 1.39
CHMP4A-201ENST00000347519 PDE8AO60658 829 aa23.75■■□□□ 1.39
CHMP4A-201ENST00000347519 ZBTB7AO95365 584 aa23.75■■□□□ 1.39
CHMP4A-201ENST00000347519 MTX1Q13505 466 aa23.75■■□□□ 1.39
CHMP4A-201ENST00000347519 CNBD1Q8NA66 436 aa23.75■■□□□ 1.39
CHMP4A-201ENST00000347519 SLC16A10Q8TF71 515 aa23.75■■□□□ 1.39
CHMP4A-201ENST00000347519 ANKRD31Q8N7Z5 1873 aa23.75■■□□□ 1.39
CHMP4A-201ENST00000347519 CSF1RP07333 972 aa23.74■■□□□ 1.39
CHMP4A-201ENST00000347519 GTF2E1P29083 439 aaPredicted RBP23.74■■□□□ 1.39
CHMP4A-201ENST00000347519 HDAC1Q13547 482 aaPredicted RBP23.74■■□□□ 1.39
CHMP4A-201ENST00000347519 POLA2Q14181 598 aa23.74■■□□□ 1.39
CHMP4A-201ENST00000347519 CCDC85AQ96PX6 553 aaPredicted RBP23.74■■□□□ 1.39
CHMP4A-201ENST00000347519 CTSWP56202 376 aa23.73■■□□□ 1.39
CHMP4A-201ENST00000347519 SRGAP3O43295 1099 aa23.72■■□□□ 1.39
CHMP4A-201ENST00000347519 TTLL11Q8NHH1 800 aa23.72■■□□□ 1.39
CHMP4A-201ENST00000347519 SSH3Q8TE77 659 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms