RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MAP3K11Q16584 847 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 HDAC5Q9UQL6 1122 aa14.13□□□□□ -0.15
USP1-201ENST00000339950 SMC2O95347 1197 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 PTGS1P23219 599 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 APOBRQ0VD83 1088 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 COL9A3Q14050 684 aaPredicted RBP14.12□□□□□ -0.15
USP1-201ENST00000339950 ZNF496Q96IT1 587 aaPredicted RBP14.12□□□□□ -0.15
USP1-201ENST00000339950 LIG1P18858 919 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 ZNF445P59923 1031 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 Q6ZUG5 572 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 CCDC186Q7Z3E2 898 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 HELBQ8NG08 1087 aaPredicted RBP14.12□□□□□ -0.15
USP1-201ENST00000339950 PDCL3Q9H2J4 239 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 OFD1O75665 1012 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 BRPF1P55201 1214 aaPredicted RBP14.12□□□□□ -0.15
USP1-201ENST00000339950 PTPN21Q16825 1174 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 ANO6Q4KMQ2 910 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 TPCN1Q9ULQ1 816 aa14.12□□□□□ -0.15
USP1-201ENST00000339950 RNMTO43148 476 aaKnown RBP14.11□□□□□ -0.15
USP1-201ENST00000339950 HSPA4P34932 840 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 ERC1Q8IUD2 1116 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 EVI5LQ96CN4 794 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 CAMSAP1Q5T5Y3 1602 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 BEND3Q5T5X7 828 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 RALYLQ86SE5 291 aaKnown RBP14.11□□□□□ -0.15
USP1-201ENST00000339950 PTPRMP28827 1452 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 TMEM2Q9UHN6 1383 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 A1BGP04217 495 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 UBE2HP62256 183 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 ZNF589Q86UQ0 364 aaPredicted RBP14.11□□□□□ -0.15
USP1-201ENST00000339950 SSH3Q8TE77 659 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 KIDINS220Q9ULH0 1771 aa14.11□□□□□ -0.15
USP1-201ENST00000339950 KINO60870 393 aaKnown RBP14.1□□□□□ -0.15
USP1-201ENST00000339950 TTLL5Q6EMB2 1281 aa14.1□□□□□ -0.15
USP1-201ENST00000339950 PTCH1Q13635 1447 aa14.1□□□□□ -0.15
USP1-201ENST00000339950 HSPA2P54652 639 aa14.1□□□□□ -0.15
USP1-201ENST00000339950 LRMPQ12912 555 aa14.1□□□□□ -0.15
USP1-201ENST00000339950 STK38Q15208 465 aa14.1□□□□□ -0.15
USP1-201ENST00000339950 NOLC1Q14978 699 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP1-201ENST00000339950 RAD50Q92878 1312 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 SBNO1A3KN83 1393 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 PES1O00541 588 aaKnown RBP14.09□□□□□ -0.15
USP1-201ENST00000339950 IFIT1P09914 478 aaKnown RBP14.09□□□□□ -0.15
USP1-201ENST00000339950 HOMER1Q86YM7 354 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 PPP1R9BQ96SB3 815 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 AXIN2Q9Y2T1 843 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 CCDC171Q6TFL3 1326 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 IBTKQ9P2D0 1353 aaPredicted RBP14.09□□□□□ -0.15
USP1-201ENST00000339950 ZNF165P49910 485 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 IP6K1Q92551 441 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 NEK1Q96PY6 1258 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 CHMP4AQ9BY43 222 aa14.09□□□□□ -0.15
USP1-201ENST00000339950 EPHA10Q5JZY3 1008 aa14.08□□□□□ -0.15
USP1-201ENST00000339950 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.08□□□□□ -0.15
USP1-201ENST00000339950 TTC21AQ8NDW8 1320 aa14.08□□□□□ -0.15
USP1-201ENST00000339950 CD163L1Q9NR16 1453 aa14.08□□□□□ -0.16
USP1-201ENST00000339950 SLC27A2O14975 620 aa14.08□□□□□ -0.16
USP1-201ENST00000339950 PDCP20941 246 aa14.08□□□□□ -0.16
USP1-201ENST00000339950 TTC39AQ5SRH9 613 aa14.08□□□□□ -0.16
USP1-201ENST00000339950 SYNE3Q6ZMZ3 975 aa14.08□□□□□ -0.16
USP1-201ENST00000339950 CNNM1Q9NRU3 951 aa14.08□□□□□ -0.16
USP1-201ENST00000339950 AKAP4Q5JQC9 854 aa14.08□□□□□ -0.16
USP1-201ENST00000339950 NOL7Q9UMY1 257 aaKnown RBP14.08□□□□□ -0.16
USP1-201ENST00000339950 HTATSF1O43719 755 aaKnown RBP14.07□□□□□ -0.16
USP1-201ENST00000339950 GIGYF1O75420 1035 aaPredicted RBP14.07□□□□□ -0.16
USP1-201ENST00000339950 PDILTQ8N807 584 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 LINS1Q8NG48 757 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 LSG1Q9H089 658 aaKnown RBP14.07□□□□□ -0.16
USP1-201ENST00000339950 CEP126Q9P2H0 1117 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 ALKQ9UM73 1620 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 TTC6Q86TZ1 520 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 KCNH5Q8NCM2 988 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 PI4K2BQ8TCG2 481 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 GPHNQ9NQX3 736 aaPredicted RBP14.07□□□□□ -0.16
USP1-201ENST00000339950 GJB4Q9NTQ9 266 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 HYPKQ9NX55 129 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 GTF2E1P29083 439 aaPredicted RBP14.07□□□□□ -0.16
USP1-201ENST00000339950 MARCKSP29966 332 aaPredicted RBP14.07□□□□□ -0.16
USP1-201ENST00000339950 CCDC57Q2TAC2 916 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 NRBP1Q9UHY1 535 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 ARHGEF40Q8TER5 1519 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 ANAPC15P60006 121 aa14.07□□□□□ -0.16
USP1-201ENST00000339950 FAM89AQ96GI7 184 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 PPP6R1Q9UPN7 881 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 HECW2Q9P2P5 1572 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 A2ML1A8K2U0 1454 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 NRXN1Q9ULB1 1477 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 ATP10DQ9P241 1426 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 IGSF1Q8N6C5 1336 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 TRDNQ13061 729 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 ZNF790Q6PG37 636 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 NUP133Q8WUM0 1156 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 ZSCAN31Q96LW9 406 aaPredicted RBP14.06□□□□□ -0.16
USP1-201ENST00000339950 MTMR6Q9Y217 621 aa14.06□□□□□ -0.16
USP1-201ENST00000339950 USP6P35125 1406 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 KIAA0232Q92628 1395 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 SASH1O94885 1247 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 TYRO3Q06418 890 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 FSIP1Q8NA03 581 aa14.05□□□□□ -0.16
USP1-201ENST00000339950 TRERF1Q96PN7 1200 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms