RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZSCAN29Q8IWY8 852 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-201ENST00000326004 EDEM1Q92611 657 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 BRD7Q9NPI1 651 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 NDFIP2Q9NV92 336 aa5.9□□□□□ -1.46
HMGB1-201ENST00000326004 CUEDC1Q9NWM3 386 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-201ENST00000326004 NXF1Q9UBU9 619 aaKnown RBP5.9□□□□□ -1.46
HMGB1-201ENST00000326004 ATXN7L1Q9ULK2 861 aaPredicted RBP5.9□□□□□ -1.46
HMGB1-201ENST00000326004 PDGFAP04085 211 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 DNM1Q05193 864 aaKnown RBP5.89□□□□□ -1.47
HMGB1-201ENST00000326004 TNP2Q05952 138 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 EHHADHQ08426 723 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 ZNF787Q6DD87 383 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 SV2AQ7L0J3 742 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 GPR152Q8TDT2 470 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 ASB16Q96NS5 453 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 TRERF1Q96PN7 1200 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 CFHR5Q9BXR6 569 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 CCDC87Q9NVE4 849 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 POLIQ9UNA4 740 aa5.89□□□□□ -1.47
HMGB1-201ENST00000326004 FNDC3AQ9Y2H6 1198 aaKnown RBP5.89□□□□□ -1.47
HMGB1-201ENST00000326004 RTCBQ9Y3I0 505 aaKnown RBP5.89□□□□□ -1.47
HMGB1-201ENST00000326004 CDC14CA4D256 554 aa5.88□□□□□ -1.47
HMGB1-201ENST00000326004 KHNYNO15037 678 aaKnown RBP5.88□□□□□ -1.47
HMGB1-201ENST00000326004 BNIP3LO60238 219 aa5.88□□□□□ -1.47
HMGB1-201ENST00000326004 MAPTP10636 758 aaKnown RBP5.88□□□□□ -1.47
HMGB1-201ENST00000326004 RGL4Q8IZJ4 473 aa5.88□□□□□ -1.47
HMGB1-201ENST00000326004 GJD3Q8N144 294 aa5.88□□□□□ -1.47
HMGB1-201ENST00000326004 TTC16Q8NEE8 873 aa5.88□□□□□ -1.47
HMGB1-201ENST00000326004 GTPBP3Q969Y2 492 aaKnown RBP5.88□□□□□ -1.47
HMGB1-201ENST00000326004 NUDT16Q96DE0 195 aaKnown RBP5.88□□□□□ -1.47
HMGB1-201ENST00000326004 DMRTB1Q96MA1 342 aa5.88□□□□□ -1.47
HMGB1-201ENST00000326004 KCNH4Q9UQ05 1017 aa5.88□□□□□ -1.47
HMGB1-201ENST00000326004 DCDC2BA2VCK2 349 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 H3BM21 787 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 EGFRP00533 1210 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 FAM182BQ5T319 152 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 DNAJC14Q6Y2X3 702 aaPredicted RBP5.87□□□□□ -1.47
HMGB1-201ENST00000326004 CMTR1Q8N1G2 835 aaKnown RBP5.87□□□□□ -1.47
HMGB1-201ENST00000326004 VWA5B2Q8N398 1253 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 ABHD17AQ96GS6 310 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 FAM129BQ96TA1 746 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 EFCC1Q9HA90 598 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 MARK1Q9P0L2 795 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 KCNMB2Q9Y691 235 aa5.87□□□□□ -1.47
HMGB1-201ENST00000326004 GRNP28799 593 aaKnown RBP5.86□□□□□ -1.47
HMGB1-201ENST00000326004 PDE12Q6L8Q7 609 aaKnown RBP5.86□□□□□ -1.47
HMGB1-201ENST00000326004 ALKBH8Q96BT7 664 aaKnown RBP5.86□□□□□ -1.47
HMGB1-201ENST00000326004 UBAP1LF5GYI3 381 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 XYLBO75191 536 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 NEFLP07196 543 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 VSIG8P0DPA2 414 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 FGFR3P22607 806 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 SFSWAPQ12872 951 aaKnown RBP5.85□□□□□ -1.47
HMGB1-201ENST00000326004 CCINQ13939 588 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 COL19A1Q14993 1142 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 XKR5Q6UX68 686 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 TMC7Q7Z402 723 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 TMC1Q8TDI8 760 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 SLC16A10Q8TF71 515 aa5.85□□□□□ -1.47
HMGB1-201ENST00000326004 ANKRD33BA6NCL7 494 aa5.84□□□□□ -1.47
HMGB1-201ENST00000326004 TERTO14746 1132 aaKnown RBP5.84□□□□□ -1.47
HMGB1-201ENST00000326004 TREHO43280 583 aa5.84□□□□□ -1.47
HMGB1-201ENST00000326004 IGHA2P01877 340 aa5.84□□□□□ -1.47
HMGB1-201ENST00000326004 TRIP4Q15650 581 aaPredicted RBP5.84□□□□□ -1.47
HMGB1-201ENST00000326004 C8orf34Q49A92 452 aa5.84□□□□□ -1.47
HMGB1-201ENST00000326004 RGS22Q8NE09 1264 aa5.84□□□□□ -1.47
HMGB1-201ENST00000326004 GGNBP2Q9H3C7 697 aa5.84□□□□□ -1.47
HMGB1-201ENST00000326004 USP20Q9Y2K6 914 aa5.84□□□□□ -1.47
HMGB1-201ENST00000326004 GPR25O00155 361 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 CD33P20138 364 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 SPEM2Q0P670 501 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 NEUROD1Q13562 356 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 ZNF438Q7Z4V0 828 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 NLRP13Q86W25 1043 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 NPAS4Q8IUM7 802 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 GSX2Q9BZM3 304 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 STRN4Q9NRL3 753 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 NSFL1CQ9UNZ2 370 aaKnown RBP5.83□□□□□ -1.48
HMGB1-201ENST00000326004 AMOTL2Q9Y2J4 779 aa5.83□□□□□ -1.48
HMGB1-201ENST00000326004 GPR182O15218 404 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 MX2P20592 715 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 VEGFBP49765 207 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 PLCB3Q01970 1234 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 FMR1Q06787 632 aaKnown RBP eCLIP5.82□□□□□ -1.487e-15■■■■□ 21.6
HMGB1-201ENST00000326004 DSC3Q14574 896 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 SNX29Q8TEQ0 813 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 PNMA5Q96PV4 448 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 ELP3Q9H9T3 547 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 HCN2Q9UL51 889 aa5.82□□□□□ -1.48
HMGB1-201ENST00000326004 BMP4P12644 408 aa5.81□□□□□ -1.48
HMGB1-201ENST00000326004 FGD1P98174 961 aa5.81□□□□□ -1.48
HMGB1-201ENST00000326004 CTBSQ01459 385 aa5.81□□□□□ -1.48
HMGB1-201ENST00000326004 IRF7Q92985 503 aa5.81□□□□□ -1.48
HMGB1-201ENST00000326004 NIF3L1Q9GZT8 377 aa5.81□□□□□ -1.48
HMGB1-201ENST00000326004 AVENQ9NQS1 362 aaPredicted RBP5.81□□□□□ -1.48
HMGB1-201ENST00000326004 MBIPQ9NS73 344 aa5.81□□□□□ -1.48
HMGB1-201ENST00000326004 ABI2Q9NYB9 513 aaPredicted RBP5.81□□□□□ -1.48
HMGB1-201ENST00000326004 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.81□□□□□ -1.48
HMGB1-201ENST00000326004 A6NHS1 94 aa5.8□□□□□ -1.48
HMGB1-201ENST00000326004 TNFRSF21O75509 655 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms