RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 FIBPO43427 364 aa11.08□□□□□ -0.64
TMEM39A-201ENST00000319172 TIMM10P62072 90 aa11.08□□□□□ -0.64
TMEM39A-201ENST00000319172 BICD2Q8TD16 824 aa11.08□□□□□ -0.64
TMEM39A-201ENST00000319172 IL15P40933 162 aaPredicted RBP11.08□□□□□ -0.64
TMEM39A-201ENST00000319172 BRPF1P55201 1214 aaPredicted RBP11.08□□□□□ -0.64
TMEM39A-201ENST00000319172 DIP2AQ14689 1571 aa11.08□□□□□ -0.64
TMEM39A-201ENST00000319172 NEURL1BA8MQ27 555 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 HCLS1P14317 486 aaPredicted RBP11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 TDO2P48775 406 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 ATP2B3Q16720 1220 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 CDCA7Q9BWT1 371 aaPredicted RBP11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 USP21Q9UK80 565 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 CD163L1Q9NR16 1453 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 DHX16O60231 1041 aaKnown RBP11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 SLC5A1P13866 664 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 FAM182BQ5T319 152 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 CCDC83Q8IWF9 413 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 TCEANC2Q96MN5 208 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 ANKIB1Q9P2G1 1089 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 NACAP1Q9BZK3 213 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 SIRT2Q8IXJ6 389 aa11.07□□□□□ -0.64
TMEM39A-201ENST00000319172 RASSF8Q8NHQ8 419 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 CWC22Q9HCG8 908 aaKnown RBP11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 HMGB1P09429 215 aaKnown RBP11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 CEBPZQ03701 1054 aaKnown RBP11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 CAVIN4Q5BKX8 364 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 DDX11Q96FC9 970 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 SETDB2Q96T68 719 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 CDC5LQ99459 802 aaKnown RBP11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 UTP14AQ9BVJ6 771 aaKnown RBP11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 CTNNA3Q9UI47 895 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 NDUFB9Q9Y6M9 179 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 SIGLEC1Q9BZZ2 1709 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 GNPATO15228 680 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 HAND2P61296 217 aa11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 CAVIN1Q6NZI2 390 aaKnown RBP11.06□□□□□ -0.64
TMEM39A-201ENST00000319172 ARHGEF28Q8N1W1 1705 aaKnown RBP11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 CHMLP26374 656 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 MCM4P33991 863 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 KRT32Q14532 448 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 SART3Q15020 963 aaKnown RBP11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 CCDC152Q4G0S7 254 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 LARP1BQ659C4 914 aaKnown RBP11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 CCDC191Q8NCU4 936 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 ANKRD1Q15327 319 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 CCDC24Q8N4L8 307 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 DBNDD2Q9BQY9 259 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 TRIM34Q9BYJ4 488 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 ATP2B1P20020 1258 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 IMMTQ16891 758 aaKnown RBP11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 FERMT3Q86UX7 667 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 ZNF219Q9P2Y4 722 aaPredicted RBP11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 TNS3Q68CZ2 1445 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 PPFIA3O75145 1194 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 PDCP20941 246 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 KCNQ4P56696 695 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 SSH3Q8TE77 659 aa11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 BCL11BQ9C0K0 894 aaPredicted RBP11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 U3KPZ7 1027 aaPredicted RBP11.05□□□□□ -0.64
TMEM39A-201ENST00000319172 MAP3K12Q12852 859 aa11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 NMIQ13287 307 aaPredicted RBP11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 RTCBQ9Y3I0 505 aaKnown RBP11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 MINDY4BA8MYZ0 360 aa11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 TTC41PQ6P2S7 1318 aa11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 MYO5BQ9ULV0 1848 aa11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 GSPT1P15170 499 aaKnown RBP11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 SSFA2P28290 1259 aa11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 RPGRQ92834 1020 aaKnown RBP11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 CCNL1Q9UK58 526 aaPredicted RBP11.04□□□□□ -0.64
TMEM39A-201ENST00000319172 FER1L4A9Z1Z3 1794 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 SAMD1Q6SPF0 538 aaPredicted RBP11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 CCDC87Q9NVE4 849 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 CIZ1Q9ULV3 898 aaPredicted RBP11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 REREQ9P2R6 1566 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 EYA2O00167 538 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 MSNP26038 577 aaKnown RBP11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 NUP133Q8WUM0 1156 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 NLRP3Q96P20 1036 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 RBM8AQ9Y5S9 174 aaKnown RBP11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 KDRP35968 1356 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 ANKRD18AQ8IVF6 992 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 PIGBQ92521 554 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 NAPBQ9H115 298 aa11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 WDR33Q9C0J8 1336 aaKnown RBP11.03□□□□□ -0.64
TMEM39A-201ENST00000319172 ITGA6P23229 1130 aa11.02□□□□□ -0.64
TMEM39A-201ENST00000319172 TCIRG1Q13488 830 aa11.02□□□□□ -0.64
TMEM39A-201ENST00000319172 SH3TC1Q8TE82 1336 aa11.02□□□□□ -0.64
TMEM39A-201ENST00000319172 TNNI3KQ59H18 835 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 VPS53Q5VIR6 699 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 RNF214Q8ND24 703 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 ZSCAN31Q96LW9 406 aaPredicted RBP11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 LRRC2Q9BYS8 371 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 ZBTB1Q9Y2K1 713 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 FPGT-TNNI3KV9GXZ4 949 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 A0A1B0GUL7 405 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 EDC3Q96F86 508 aaKnown RBP11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 USP26Q9BXU7 913 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 PAG1Q9NWQ8 432 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 LIMCH1Q9UPQ0 1083 aa11.02□□□□□ -0.65
TMEM39A-201ENST00000319172 C6orf229H3BNL8 230 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 158.4 ms