RNA–Protein interactions for RNA: ENST00000301475.1

ZNF558-201, Transcript of zinc finger protein 558, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF558, Length 3,014 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-201ENST00000301475 NPHP3Q7Z494 1330 aa12.87□□□□□ -0.35
ZNF558-201ENST00000301475 CCDC66A2RUB6 948 aa12.87□□□□□ -0.35
ZNF558-201ENST00000301475 LEO1Q8WVC0 666 aaPredicted RBP12.87□□□□□ -0.35
ZNF558-201ENST00000301475 POLA2Q14181 598 aa12.87□□□□□ -0.35
ZNF558-201ENST00000301475 PGBD1Q96JS3 809 aa12.87□□□□□ -0.35
ZNF558-201ENST00000301475 SPATA32Q96LK8 384 aa12.87□□□□□ -0.35
ZNF558-201ENST00000301475 RAB11FIP3O75154 756 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 LTKP29376 864 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 CDC25BP30305 580 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 TM6SF1Q9BZW5 370 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 KCNB2Q92953 911 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 CACNA1FO60840 1977 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 PXDNLA1KZ92 1463 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 TTC21BQ7Z4L5 1316 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 GOLGA6L4A6NEF3 574 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 CCZ1BP86790 482 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 CCZ1P86791 482 aaPredicted RBP12.86□□□□□ -0.35
ZNF558-201ENST00000301475 PDE4CQ08493 712 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 IQCB1Q15051 598 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 PTPN14Q15678 1187 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 C11orf57Q6ZUT1 292 aaPredicted RBP12.86□□□□□ -0.35
ZNF558-201ENST00000301475 KIF1BPQ96EK5 621 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 TCEANC2Q96MN5 208 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 TRMT1Q9NXH9 659 aaKnown RBP12.86□□□□□ -0.35
ZNF558-201ENST00000301475 NAP1L2Q9ULW6 460 aaPredicted RBP12.86□□□□□ -0.35
ZNF558-201ENST00000301475 CCDC61Q9Y6R9 512 aa12.86□□□□□ -0.35
ZNF558-201ENST00000301475 METP08581 1390 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 MAP3K5Q99683 1374 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 CCDC30Q5VVM6 783 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 LARP1Q6PKG0 1096 aaKnown RBP12.85□□□□□ -0.35
ZNF558-201ENST00000301475 ERO1AQ96HE7 468 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 TIGD1Q96MW7 591 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 SCAND2PQ9GZW5 306 aaPredicted RBP12.85□□□□□ -0.35
ZNF558-201ENST00000301475 USP16Q9Y5T5 823 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 PRR36Q9H6K5 1346 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 OVOS2A0A0J9YW53 1432 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 OVOS2Q6IE36 1432 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 SRGAP3O43295 1099 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 SKILP12757 684 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 NECTIN1Q15223 517 aa12.85□□□□□ -0.35
ZNF558-201ENST00000301475 ADGRL3Q9HAR2 1447 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 SPATA31D1Q6ZQQ2 1576 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 ADCY9O60503 1353 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 SLFNL1Q499Z3 407 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 SARM1Q6SZW1 724 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 BICD2Q8TD16 824 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 LRRC37A3O60309 1634 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 NPHP1O15259 732 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 SOX12O15370 315 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 CAPN2P17655 700 aa12.84□□□□□ -0.35
ZNF558-201ENST00000301475 A0A087WWV3 80 aa12.83□□□□□ -0.35
ZNF558-201ENST00000301475 CCDC69A6NI79 296 aa12.83□□□□□ -0.35
ZNF558-201ENST00000301475 CDK11BP21127 795 aaKnown RBP12.83□□□□□ -0.35
ZNF558-201ENST00000301475 LRRN4CLQ8ND94 238 aa12.83□□□□□ -0.35
ZNF558-201ENST00000301475 MRFAP1L1Q96HT8 127 aa12.83□□□□□ -0.35
ZNF558-201ENST00000301475 RBM8AQ9Y5S9 174 aaKnown RBP12.83□□□□□ -0.35
ZNF558-201ENST00000301475 TAF6LQ9Y6J9 622 aa12.83□□□□□ -0.35
ZNF558-201ENST00000301475 USP42Q9H9J4 1324 aaKnown RBP12.83□□□□□ -0.36
ZNF558-201ENST00000301475 CREB3L3Q68CJ9 461 aa12.83□□□□□ -0.36
ZNF558-201ENST00000301475 FILIP1Q7Z7B0 1213 aa12.83□□□□□ -0.36
ZNF558-201ENST00000301475 DNAJC5Q9H3Z4 198 aa12.83□□□□□ -0.36
ZNF558-201ENST00000301475 SLU7O95391 586 aaKnown RBP12.83□□□□□ -0.36
ZNF558-201ENST00000301475 NBPF7P0C2Y1 421 aaPredicted RBP12.83□□□□□ -0.36
ZNF558-201ENST00000301475 PDCP20941 246 aa12.83□□□□□ -0.36
ZNF558-201ENST00000301475 CCAR2Q8N163 923 aaKnown RBP12.83□□□□□ -0.36
ZNF558-201ENST00000301475 PHAXQ9H814 394 aaKnown RBP12.83□□□□□ -0.36
ZNF558-201ENST00000301475 NALCNQ8IZF0 1738 aa12.82□□□□□ -0.36
ZNF558-201ENST00000301475 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.82□□□□□ -0.36
ZNF558-201ENST00000301475 GLRX3O76003 335 aaKnown RBP12.82□□□□□ -0.36
ZNF558-201ENST00000301475 CEP170BQ9Y4F5 1589 aaPredicted RBP12.82□□□□□ -0.36
ZNF558-201ENST00000301475 TULP2O00295 520 aa12.82□□□□□ -0.36
ZNF558-201ENST00000301475 H2AFXP16104 143 aaPredicted RBP12.82□□□□□ -0.36
ZNF558-201ENST00000301475 HDGFP51858 240 aaKnown RBP12.82□□□□□ -0.36
ZNF558-201ENST00000301475 MAPK8IP2Q13387 824 aaPredicted RBP12.82□□□□□ -0.36
ZNF558-201ENST00000301475 RUFY2Q8WXA3 655 aa12.82□□□□□ -0.36
ZNF558-201ENST00000301475 FMN2Q9NZ56 1722 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 GOLGA6L19H0YKK7 550 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 NEMFO60524 1076 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 GTF3C6Q969F1 213 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 TMEM2Q9UHN6 1383 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 NRXN3Q9Y4C0 1643 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 ZKSCAN1P17029 563 aaPredicted RBP12.81□□□□□ -0.36
ZNF558-201ENST00000301475 ERCC6LQ2NKX8 1250 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 FAM227BQ96M60 508 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 CALCOCO1Q9P1Z2 691 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 FHOD1Q9Y613 1164 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 TTC41PQ6P2S7 1318 aa12.81□□□□□ -0.36
ZNF558-201ENST00000301475 CYP2C19P33261 490 aa12.8□□□□□ -0.36
ZNF558-201ENST00000301475 STK3Q13188 491 aa12.8□□□□□ -0.36
ZNF558-201ENST00000301475 TOB2Q14106 344 aaPredicted RBP12.8□□□□□ -0.36
ZNF558-201ENST00000301475 EID1Q9Y6B2 187 aa12.8□□□□□ -0.36
ZNF558-201ENST00000301475 KDRP35968 1356 aa12.8□□□□□ -0.36
ZNF558-201ENST00000301475 SLC27A2O14975 620 aa12.8□□□□□ -0.36
ZNF558-201ENST00000301475 JAK2O60674 1132 aa12.8□□□□□ -0.36
ZNF558-201ENST00000301475 NPHP4O75161 1426 aaPredicted RBP12.8□□□□□ -0.36
ZNF558-201ENST00000301475 RESTQ13127 1097 aa12.8□□□□□ -0.36
ZNF558-201ENST00000301475 DHX40Q8IX18 779 aaKnown RBP12.8□□□□□ -0.36
ZNF558-201ENST00000301475 SYTL4Q96C24 671 aaPredicted RBP12.8□□□□□ -0.36
ZNF558-201ENST00000301475 NOL10Q9BSC4 688 aaKnown RBP12.8□□□□□ -0.36
ZNF558-201ENST00000301475 CAVIN2O95810 425 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 107.1 ms