RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 PHAXQ9H814 394 aaKnown RBP18.04■□□□□ 0.48
SHH-201ENST00000297261 IGSF1Q8N6C5 1336 aa18.04■□□□□ 0.48
SHH-201ENST00000297261 STX6O43752 255 aa18.04■□□□□ 0.48
SHH-201ENST00000297261 ANKRD1Q15327 319 aa18.04■□□□□ 0.48
SHH-201ENST00000297261 IL17REQ8NFR9 667 aa18.04■□□□□ 0.48
SHH-201ENST00000297261 AXDND1Q5T1B0 1012 aaPredicted RBP18.04■□□□□ 0.48
SHH-201ENST00000297261 UVSSAQ2YD98 709 aa18.04■□□□□ 0.48
SHH-201ENST00000297261 LRRFIP1Q32MZ4 808 aaKnown RBP18.04■□□□□ 0.48
SHH-201ENST00000297261 CALCOCO1Q9P1Z2 691 aa18.04■□□□□ 0.48
SHH-201ENST00000297261 SFPQP23246 707 aaKnown RBP eCLIP18.03■□□□□ 0.48
SHH-201ENST00000297261 CFAP45Q9UL16 551 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 LIMCH1Q9UPQ0 1083 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 URI1O94763 535 aaPredicted RBP18.03■□□□□ 0.48
SHH-201ENST00000297261 ZNF165P49910 485 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 USP48Q86UV5 1035 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 GAS2L3Q86XJ1 694 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 ZCRB1Q8TBF4 217 aaKnown RBP18.03■□□□□ 0.48
SHH-201ENST00000297261 CLSTN1O94985 981 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 CCDC186Q7Z3E2 898 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 AACSQ86V21 672 aa18.03■□□□□ 0.48
SHH-201ENST00000297261 SAFBQ15424 915 aaKnown RBP eCLIP18.02■□□□□ 0.48
SHH-201ENST00000297261 PPP1R42Q7Z4L9 355 aa18.02■□□□□ 0.48
SHH-201ENST00000297261 KIF1BPQ96EK5 621 aa18.02■□□□□ 0.48
SHH-201ENST00000297261 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.02■□□□□ 0.48
SHH-201ENST00000297261 V9GYY5 206 aaPredicted RBP18.02■□□□□ 0.48
SHH-201ENST00000297261 UBE2HP62256 183 aa18.02■□□□□ 0.48
SHH-201ENST00000297261 ANKARQ7Z5J8 1434 aa18.02■□□□□ 0.48
SHH-201ENST00000297261 SCAND2PQ9GZW5 306 aaPredicted RBP18.02■□□□□ 0.47
SHH-201ENST00000297261 HIP1O00291 1037 aa18.02■□□□□ 0.47
SHH-201ENST00000297261 SNRPA1P09661 255 aaKnown RBP18.02■□□□□ 0.47
SHH-201ENST00000297261 CEP85Q6P2H3 762 aa18.02■□□□□ 0.47
SHH-201ENST00000297261 CNPY2Q9Y2B0 182 aa18.02■□□□□ 0.47
SHH-201ENST00000297261 PIP4K2AP48426 406 aaPredicted RBP18.01■□□□□ 0.47
SHH-201ENST00000297261 ARHGEF28Q8N1W1 1705 aaKnown RBP18.01■□□□□ 0.47
SHH-201ENST00000297261 TSC1Q92574 1164 aa18.01■□□□□ 0.47
SHH-201ENST00000297261 SIGLEC1Q9BZZ2 1709 aa18.01■□□□□ 0.47
SHH-201ENST00000297261 CAGE1Q8TC20 777 aa18.01■□□□□ 0.47
SHH-201ENST00000297261 ERCC4Q92889 916 aaPredicted RBP18■□□□□ 0.47
SHH-201ENST00000297261 RAB11FIP3O75154 756 aa18■□□□□ 0.47
SHH-201ENST00000297261 SLAIN2Q9P270 581 aa18■□□□□ 0.47
SHH-201ENST00000297261 C17orf53Q8N3J3 647 aaPredicted RBP18■□□□□ 0.47
SHH-201ENST00000297261 PTPRUQ92729 1446 aa18■□□□□ 0.47
SHH-201ENST00000297261 ZNF853P0CG23 659 aa18■□□□□ 0.47
SHH-201ENST00000297261 SMAP1Q8IYB5 467 aaPredicted RBP18■□□□□ 0.47
SHH-201ENST00000297261 KIAA0232Q92628 1395 aa17.99■□□□□ 0.47
SHH-201ENST00000297261 CFAP100Q494V2 611 aa17.99■□□□□ 0.47
SHH-201ENST00000297261 ARHGEF25Q86VW2 580 aa17.99■□□□□ 0.47
SHH-201ENST00000297261 CCDC102AQ96A19 550 aa17.99■□□□□ 0.47
SHH-201ENST00000297261 DCTPP1Q9H773 170 aa17.99■□□□□ 0.47
SHH-201ENST00000297261 CPS1P31327 1500 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 ATP5J2-PTCD1G3V325 749 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 RBM25P49756 843 aaKnown RBP17.98■□□□□ 0.47
SHH-201ENST00000297261 NAP1L1P55209 391 aaKnown RBP17.98■□□□□ 0.47
SHH-201ENST00000297261 XAGE3Q8WTP9 111 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 KIF2AO00139 706 aaPredicted RBP17.98■□□□□ 0.47
SHH-201ENST00000297261 GJB2P29033 226 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 COPS6Q7L5N1 327 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 CCDC85AQ96PX6 553 aaPredicted RBP17.98■□□□□ 0.47
SHH-201ENST00000297261 BABAM1Q9NWV8 329 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 TECPR2O15040 1411 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 STARD3NLO95772 234 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 JARID2Q92833 1246 aaPredicted RBP17.98■□□□□ 0.47
SHH-201ENST00000297261 TSPYL1Q9H0U9 437 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 ZBTB3Q9H5J0 574 aa17.98■□□□□ 0.47
SHH-201ENST00000297261 PTCH1Q13635 1447 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 REREQ9P2R6 1566 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 MYO3AQ8NEV4 1616 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 AEBP2Q6ZN18 517 aaPredicted RBP17.97■□□□□ 0.47
SHH-201ENST00000297261 KRT222Q8N1A0 295 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 CEP135Q66GS9 1140 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 USP19O94966 1318 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 DCAF5Q96JK2 942 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 GTPBP4Q9BZE4 634 aaKnown RBP17.97■□□□□ 0.47
SHH-201ENST00000297261 CDC42BPGQ6DT37 1551 aa17.97■□□□□ 0.47
SHH-201ENST00000297261 A0A087WZG4 1122 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 EXOC5O00471 708 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 KCNQ3O43525 872 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 KSR2Q6VAB6 950 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 TIGD1Q96MW7 591 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 LRRC7Q96NW7 1537 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 ABCC4O15439 1325 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 IL2RBP14784 551 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 ANKRD13DQ6ZTN6 518 aa17.96■□□□□ 0.47
SHH-201ENST00000297261 ATP8B2P98198 1209 aa17.96■□□□□ 0.46
SHH-201ENST00000297261 ADGRL3Q9HAR2 1447 aa17.95■□□□□ 0.46
SHH-201ENST00000297261 ERLIN1O75477 346 aa17.95■□□□□ 0.46
SHH-201ENST00000297261 NOL10Q9BSC4 688 aaKnown RBP17.95■□□□□ 0.46
SHH-201ENST00000297261 EIF3JO75822 258 aaKnown RBP17.95■□□□□ 0.46
SHH-201ENST00000297261 ZSCAN22P10073 491 aaPredicted RBP17.95■□□□□ 0.46
SHH-201ENST00000297261 SOS1Q07889 1333 aaPredicted RBP17.95■□□□□ 0.46
SHH-201ENST00000297261 FSD2A1L4K1 749 aa17.95■□□□□ 0.46
SHH-201ENST00000297261 GUCY1B3Q02153 619 aa17.95■□□□□ 0.46
SHH-201ENST00000297261 CWF19L2Q2TBE0 894 aaKnown RBP17.95■□□□□ 0.46
SHH-201ENST00000297261 ZFP91Q96JP5 570 aaPredicted RBP17.95■□□□□ 0.46
SHH-201ENST00000297261 SH2B1Q9NRF2 756 aaPredicted RBP17.95■□□□□ 0.46
SHH-201ENST00000297261 ANO10Q9NW15 660 aa17.95■□□□□ 0.46
SHH-201ENST00000297261 MYO5BQ9ULV0 1848 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 MARCH6O60337 910 aa17.94■□□□□ 0.46
SHH-201ENST00000297261 EIF4A1P60842 406 aaKnown RBP17.94■□□□□ 0.46
SHH-201ENST00000297261 UBE3BQ7Z3V4 1068 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms