RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 CHRNA5P30532 468 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 ST5P78524 1137 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 JARID2Q92833 1246 aaPredicted RBP16.24■□□□□ 0.19
SS18-202ENST00000269138 NEURL1BA8MQ27 555 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 NEXNQ0ZGT2 675 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 RTL5Q5HYW3 569 aaPredicted RBP16.24■□□□□ 0.19
SS18-202ENST00000269138 SLC4A10Q6U841 1118 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 FAM89AQ96GI7 184 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 BRIP1Q9BX63 1249 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 WWC3Q9ULE0 1092 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 PTPRCP08575 1304 aa16.24■□□□□ 0.19
SS18-202ENST00000269138 IBTKQ9P2D0 1353 aaPredicted RBP16.23■□□□□ 0.19
SS18-202ENST00000269138 ANKRD36CQ5JPF3 1778 aa16.23■□□□□ 0.19
SS18-202ENST00000269138 PXDNLA1KZ92 1463 aa16.23■□□□□ 0.19
SS18-202ENST00000269138 TGFB2P61812 414 aa16.23■□□□□ 0.19
SS18-202ENST00000269138 BEND3Q5T5X7 828 aa16.23■□□□□ 0.19
SS18-202ENST00000269138 CCDC191Q8NCU4 936 aa16.23■□□□□ 0.19
SS18-202ENST00000269138 CWC25Q9NXE8 425 aaPredicted RBP16.23■□□□□ 0.19
SS18-202ENST00000269138 HCLS1P14317 486 aaPredicted RBP16.22■□□□□ 0.19
SS18-202ENST00000269138 KCNA3P22001 575 aa16.22■□□□□ 0.19
SS18-202ENST00000269138 C3orf67Q6ZVT6 689 aa16.22■□□□□ 0.19
SS18-202ENST00000269138 C2CD5Q86YS7 1000 aa16.22■□□□□ 0.19
SS18-202ENST00000269138 LINS1Q8NG48 757 aa16.22■□□□□ 0.19
SS18-202ENST00000269138 TNNQ9UQP3 1299 aa16.22■□□□□ 0.19
SS18-202ENST00000269138 KIF13BQ9NQT8 1826 aa16.21■□□□□ 0.19
SS18-202ENST00000269138 SLC10A5Q5PT55 438 aa16.21■□□□□ 0.19
SS18-202ENST00000269138 FRAT1Q92837 279 aaPredicted RBP16.21■□□□□ 0.19
SS18-202ENST00000269138 SH3TC1Q8TE82 1336 aa16.21■□□□□ 0.19
SS18-202ENST00000269138 PDE6BP35913 854 aa16.2■□□□□ 0.18
SS18-202ENST00000269138 GCKRQ14397 625 aa16.2■□□□□ 0.18
SS18-202ENST00000269138 ZBTB38Q8NAP3 1195 aaPredicted RBP16.2■□□□□ 0.18
SS18-202ENST00000269138 ANKRD31Q8N7Z5 1873 aa16.2■□□□□ 0.18
SS18-202ENST00000269138 KIF16BQ96L93 1317 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 H0YIN7 160 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 PCCAP05165 728 aaPredicted RBP16.19■□□□□ 0.18
SS18-202ENST00000269138 RCAN3Q9UKA8 241 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 KIAA1551Q9HCM1 1747 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 RNF123Q5XPI4 1314 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 KLRG2A4D1S0 409 aaPredicted RBP16.19■□□□□ 0.18
SS18-202ENST00000269138 H7C1W4 665 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 IRS4O14654 1257 aaPredicted RBP16.19■□□□□ 0.18
SS18-202ENST00000269138 ARHGAP45Q92619 1136 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 API5Q9BZZ5 524 aaKnown RBP16.19■□□□□ 0.18
SS18-202ENST00000269138 SRCIN1Q9C0H9 1055 aa16.19■□□□□ 0.18
SS18-202ENST00000269138 N4BP2Q86UW6 1770 aaPredicted RBP16.18■□□□□ 0.18
SS18-202ENST00000269138 SRGNP10124 158 aa16.18■□□□□ 0.18
SS18-202ENST00000269138 TRIM27P14373 513 aa16.18■□□□□ 0.18
SS18-202ENST00000269138 ZNF622Q969S3 477 aaKnown RBP eCLIP16.18■□□□□ 0.184e-7■□□□□ 10.6
SS18-202ENST00000269138 TNRC6CQ9HCJ0 1690 aaKnown RBP16.17■□□□□ 0.18
SS18-202ENST00000269138 IPO8O15397 1037 aaKnown RBP16.17■□□□□ 0.18
SS18-202ENST00000269138 ALDH1L1O75891 902 aa16.17■□□□□ 0.18
SS18-202ENST00000269138 ATF7IPQ6VMQ6 1270 aa16.17■□□□□ 0.18
SS18-202ENST00000269138 UBE3BQ7Z3V4 1068 aa16.17■□□□□ 0.18
SS18-202ENST00000269138 PELP1Q8IZL8 1130 aaKnown RBP16.17■□□□□ 0.18
SS18-202ENST00000269138 NLRP3Q96P20 1036 aa16.17■□□□□ 0.18
SS18-202ENST00000269138 YBX3P16989 372 aaKnown RBP eCLIP16.16■□□□□ 0.18
SS18-202ENST00000269138 CASP7P55210 303 aa16.16■□□□□ 0.18
SS18-202ENST00000269138 CRY2Q49AN0 593 aa16.16■□□□□ 0.18
SS18-202ENST00000269138 ZKSCAN2Q63HK3 967 aa16.16■□□□□ 0.18
SS18-202ENST00000269138 CLUAP1Q96AJ1 413 aa16.16■□□□□ 0.18
SS18-202ENST00000269138 PIM2Q9P1W9 311 aa16.16■□□□□ 0.18
SS18-202ENST00000269138 RIC1Q4ADV7 1423 aa16.16■□□□□ 0.18
SS18-202ENST00000269138 MASTLQ96GX5 879 aa16.15■□□□□ 0.18
SS18-202ENST00000269138 PDZRN3Q9UPQ7 1066 aa16.15■□□□□ 0.18
SS18-202ENST00000269138 CDHR2Q9BYE9 1310 aa16.15■□□□□ 0.18
SS18-202ENST00000269138 NPR1P16066 1061 aa16.14■□□□□ 0.18
SS18-202ENST00000269138 STYK1Q6J9G0 422 aa16.14■□□□□ 0.18
SS18-202ENST00000269138 BCS1LQ9Y276 419 aa16.14■□□□□ 0.18
SS18-202ENST00000269138 COL11A2P13942 1736 aaPredicted RBP16.14■□□□□ 0.17
SS18-202ENST00000269138 ABCC4O15439 1325 aa16.14■□□□□ 0.17
SS18-202ENST00000269138 GRM8O00222 908 aa16.14■□□□□ 0.17
SS18-202ENST00000269138 PLIN1O60240 522 aa16.14■□□□□ 0.17
SS18-202ENST00000269138 CCT4P50991 539 aaKnown RBP16.14■□□□□ 0.17
SS18-202ENST00000269138 GPR162Q16538 588 aa16.14■□□□□ 0.17
SS18-202ENST00000269138 DALRD3Q5D0E6 543 aaKnown RBP16.14■□□□□ 0.17
SS18-202ENST00000269138 TTLL6Q8N841 843 aa16.14■□□□□ 0.17
SS18-202ENST00000269138 C9orf78Q9NZ63 289 aaPredicted RBP16.14■□□□□ 0.17
SS18-202ENST00000269138 PDE8AO60658 829 aa16.13■□□□□ 0.17
SS18-202ENST00000269138 NBPF7P0C2Y1 421 aaPredicted RBP16.13■□□□□ 0.17
SS18-202ENST00000269138 HOXA10P31260 410 aaPredicted RBP16.13■□□□□ 0.17
SS18-202ENST00000269138 RPGRQ92834 1020 aaKnown RBP16.13■□□□□ 0.17
SS18-202ENST00000269138 USP44Q9H0E7 712 aa16.13■□□□□ 0.17
SS18-202ENST00000269138 RLBP1P12271 317 aa16.12■□□□□ 0.17
SS18-202ENST00000269138 SF3B3Q15393 1217 aaKnown RBP16.12■□□□□ 0.17
SS18-202ENST00000269138 INTS3Q68E01 1043 aaKnown RBP16.12■□□□□ 0.17
SS18-202ENST00000269138 CCDC85AQ96PX6 553 aaPredicted RBP16.12■□□□□ 0.17
SS18-202ENST00000269138 DDX60Q8IY21 1712 aaKnown RBP16.12■□□□□ 0.17
SS18-202ENST00000269138 EPHA10Q5JZY3 1008 aa16.11■□□□□ 0.17
SS18-202ENST00000269138 TMEM57Q8N5G2 664 aa16.11■□□□□ 0.17
SS18-202ENST00000269138 CNKSR1Q969H4 720 aa16.11■□□□□ 0.17
SS18-202ENST00000269138 RBM17Q96I25 401 aaKnown RBP16.11■□□□□ 0.17
SS18-202ENST00000269138 ZNF219Q9P2Y4 722 aaPredicted RBP16.11■□□□□ 0.17
SS18-202ENST00000269138 UTYO14607 1347 aa16.11■□□□□ 0.17
SS18-202ENST00000269138 HSP90B1P14625 803 aaKnown RBP16.1■□□□□ 0.17
SS18-202ENST00000269138 CTSWP56202 376 aa16.1■□□□□ 0.17
SS18-202ENST00000269138 PRPF40BQ6NWY9 871 aaKnown RBP16.1■□□□□ 0.17
SS18-202ENST00000269138 SLC51AQ86UW1 340 aa16.1■□□□□ 0.17
SS18-202ENST00000269138 DZIP1LQ8IYY4 767 aaKnown RBP16.1■□□□□ 0.17
SS18-202ENST00000269138 PANK1Q8TE04 598 aa16.1■□□□□ 0.17
SS18-202ENST00000269138 SUCLG2Q96I99 432 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms