RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 NWD1Q149M9 1564 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 PTCD1O75127 700 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 TOPAZ1Q8N9V7 1692 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 FOSBP53539 338 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 HSP90AB3PQ58FF7 597 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 MAP3K2Q9Y2U5 619 aa13.64□□□□□ -0.23
CLSTN3-201ENST00000266546 SLC39A6Q13433 755 aa13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 CPDO75976 1380 aa13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 LINS1Q8NG48 757 aa13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 MEIS3Q99687 375 aa13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 AXIN2Q9Y2T1 843 aa13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 KINO60870 393 aaKnown RBP13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 NOLC1Q14978 699 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 DDB1Q16531 1140 aa13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 KIF1BPQ96EK5 621 aa13.63□□□□□ -0.23
CLSTN3-201ENST00000266546 MAP4K4O95819 1239 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 MAP3K11Q16584 847 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 UVSSAQ2YD98 709 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 LRRFIP1Q32MZ4 808 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 ANKRD13DQ6ZTN6 518 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 ZNF830Q96NB3 372 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 ERBB4Q15303 1308 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 HCLS1P14317 486 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 MX1P20591 662 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 TMX3Q96JJ7 454 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 LRRFIP2Q9Y608 721 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 TAF3Q5VWG9 929 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 RBSNQ9H1K0 784 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 CRB1P82279 1406 aa13.62□□□□□ -0.23
CLSTN3-201ENST00000266546 GIGYF1O75420 1035 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 ATP8B2P98198 1209 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 DCTPP1Q9H773 170 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 PLEKHG2Q9H7P9 1386 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 SPDYE4A6NLX3 237 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 SDSP20132 328 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 TERF1P54274 439 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 G2E3Q7L622 706 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 GAS2L3Q86XJ1 694 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 SMARCC1Q92922 1105 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 MYD88Q99836 296 aa13.61□□□□□ -0.23
CLSTN3-201ENST00000266546 ZGPATQ8N5A5 531 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 FILIP1Q7Z7B0 1213 aa13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 SPATA32Q96LK8 384 aa13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 TTC12Q9H892 705 aaPredicted RBP13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 ZNF445P59923 1031 aa13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 CEBPZQ03701 1054 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 CEP85Q6P2H3 762 aa13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 XAGE3Q8WTP9 111 aa13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 ZSCAN31Q96LW9 406 aaPredicted RBP13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 JAKMIP1Q96N16 626 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 PDRG1Q9NUG6 133 aa13.6□□□□□ -0.23
CLSTN3-201ENST00000266546 CWC27Q6UX04 472 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 COPS6Q7L5N1 327 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 FERMT3Q86UX7 667 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 FSD1Q9BTV5 496 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 NALCNQ8IZF0 1738 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 SMC2O95347 1197 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 ANXA1P04083 346 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 CAMK4Q16566 473 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 CREBRFQ8IUR6 639 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 C16orf45Q96MC5 204 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 CCDC94Q9BW85 323 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 SIL1Q9H173 461 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 CPLX1O14810 134 aa13.59□□□□□ -0.23
CLSTN3-201ENST00000266546 NUTM1Q86Y26 1132 aa13.58□□□□□ -0.23
CLSTN3-201ENST00000266546 CCDC83Q8IWF9 413 aa13.58□□□□□ -0.23
CLSTN3-201ENST00000266546 CASTP20810 708 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-201ENST00000266546 NEUROD6Q96NK8 337 aa13.58□□□□□ -0.24
CLSTN3-201ENST00000266546 HIP1O00291 1037 aa13.58□□□□□ -0.24
CLSTN3-201ENST00000266546 PHAXQ9H814 394 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-201ENST00000266546 NRKQ7Z2Y5 1582 aa13.58□□□□□ -0.24
CLSTN3-201ENST00000266546 OVOS2A0A0G2JMS6 1433 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 TNNT1P13805 278 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 PPP1R9BQ96SB3 815 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 CGNQ9P2M7 1197 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 GRM8O00222 908 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 UBE2HP62256 183 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 STK3Q13188 491 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 ERICH4A6NGS2 130 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 ANKRD1Q15327 319 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 SYNE3Q6ZMZ3 975 aa13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 SMAP1Q8IYB5 467 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 C16orf71Q8IYS4 520 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 ZNF496Q96IT1 587 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 CWC25Q9NXE8 425 aaPredicted RBP13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 THRAP3Q9Y2W1 955 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLSTN3-201ENST00000266546 PIK3C2AO00443 1686 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 PDIA4P13667 645 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 PTPN14Q15678 1187 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 CPLX2Q6PUV4 134 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 PPP1R42Q7Z4L9 355 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 LIMCH1Q9UPQ0 1083 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 STX6O43752 255 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 TSHZ3Q63HK5 1081 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 BLOC1S2Q6QNY1 142 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 CWC15Q9P013 229 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 ZNF652Q9Y2D9 606 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 CEMIPQ8WUJ3 1361 aa13.56□□□□□ -0.24
CLSTN3-201ENST00000266546 A0A087WZG4 1122 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms