RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 USP5P45974 858 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NFX1Q12986 1120 aaKnown RBP7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NPAS4Q8IUM7 802 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NANOS1Q8WY41 292 aaKnown RBP7.85□□□□□ -1.15
CCDC54-201ENST00000261058 NEUROD4Q9HD90 331 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 POLIQ9UNA4 740 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 PCDHGC4Q9Y5F7 938 aa7.85□□□□□ -1.15
CCDC54-201ENST00000261058 WIPF1O43516 503 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 RIPOR1Q6ZS17 1223 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 TMC7Q7Z402 723 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 EDEM1Q92611 657 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 KCNMB2Q9Y691 235 aa7.84□□□□□ -1.15
CCDC54-201ENST00000261058 ATXN7O15265 892 aaPredicted RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 EGFRP00533 1210 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 INSM1Q01101 510 aaPredicted RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 TNP2Q05952 138 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 LAMC2Q13753 1193 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 COL19A1Q14993 1142 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 GPR152Q8TDT2 470 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 ALKBH8Q96BT7 664 aaKnown RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 BRD7Q9NPI1 651 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 STK17AQ9UEE5 414 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 RTCBQ9Y3I0 505 aaKnown RBP7.83□□□□□ -1.16
CCDC54-201ENST00000261058 GJA3Q9Y6H8 435 aa7.83□□□□□ -1.16
CCDC54-201ENST00000261058 ANKRD33BA6NCL7 494 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 TREHO43280 583 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 BNIP3LO60238 219 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 RPLP1P05386 114 aaKnown RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 DNM1Q05193 864 aaKnown RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 DSC3Q14574 896 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 TRIP4Q15650 581 aaPredicted RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 ZSCAN29Q8IWY8 852 aaPredicted RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 PIK3R5Q8WYR1 880 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 NUDT16Q96DE0 195 aaKnown RBP7.82□□□□□ -1.16
CCDC54-201ENST00000261058 DMRTB1Q96MA1 342 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 CEP63Q96MT8 703 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 AMOTL2Q9Y2J4 779 aa7.82□□□□□ -1.16
CCDC54-201ENST00000261058 GPR182O15218 404 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 EPB42P16452 691 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 PDE3BQ13370 1112 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 XKR5Q6UX68 686 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 NPAS3Q8IXF0 933 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 GGNBP2Q9H3C7 697 aa7.81□□□□□ -1.16
CCDC54-201ENST00000261058 TERTO14746 1132 aaKnown RBP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 MAPTP10636 758 aaKnown RBP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 FMR1Q06787 632 aaKnown RBP eCLIP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 AAMPQ13685 434 aa7.8□□□□□ -1.16
CCDC54-201ENST00000261058 ATXN7L1Q9ULK2 861 aaPredicted RBP7.8□□□□□ -1.16
CCDC54-201ENST00000261058 EHHADHQ08426 723 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 FAM182BQ5T319 152 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 CFHR5Q9BXR6 569 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 STRN4Q9NRL3 753 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 NXF1Q9UBU9 619 aaKnown RBP7.79□□□□□ -1.16
CCDC54-201ENST00000261058 USP20Q9Y2K6 914 aa7.79□□□□□ -1.16
CCDC54-201ENST00000261058 DCDC2BA2VCK2 349 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 PCSK2P16519 638 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 SFSWAPQ12872 951 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 PDE12Q6L8Q7 609 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 FBXO33Q7Z6M2 555 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 GTPBP3Q969Y2 492 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 KCNH4Q9UQ05 1017 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 VSIG8P0DPA2 414 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 ABHD17AQ96GS6 310 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 GSX2Q9BZM3 304 aa7.78□□□□□ -1.16
CCDC54-201ENST00000261058 FNDC3AQ9Y2H6 1198 aaKnown RBP7.78□□□□□ -1.16
CCDC54-201ENST00000261058 RBM47A0AV96 593 aaKnown RBP7.77□□□□□ -1.17
CCDC54-201ENST00000261058 H3BM21 787 aa7.77□□□□□ -1.17
CCDC54-201ENST00000261058 KHNYNO15037 678 aaKnown RBP7.77□□□□□ -1.17
CCDC54-201ENST00000261058 CMTR1Q8N1G2 835 aaKnown RBP7.77□□□□□ -1.17
CCDC54-201ENST00000261058 EFCC1Q9HA90 598 aa7.77□□□□□ -1.17
CCDC54-201ENST00000261058 MARK1Q9P0L2 795 aa7.77□□□□□ -1.17
CCDC54-201ENST00000261058 XYLBO75191 536 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 SV2AQ7L0J3 742 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 VWA5B2Q8N398 1253 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 SLC16A10Q8TF71 515 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 FOXD4L4Q8WXT5 416 aaPredicted RBP7.76□□□□□ -1.17
CCDC54-201ENST00000261058 PHF24Q9UPV7 400 aa7.76□□□□□ -1.17
CCDC54-201ENST00000261058 A6NHS1 94 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 UBAP1LF5GYI3 381 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 P4HBP07237 508 aaKnown RBP7.75□□□□□ -1.17
CCDC54-201ENST00000261058 FGFR3P22607 806 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 GRIN2CQ14957 1233 aa7.75□□□□□ -1.17
CCDC54-201ENST00000261058 TNFRSF21O75509 655 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 CCINQ13939 588 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 GAS6Q14393 721 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 C8orf34Q49A92 452 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 TRERF1Q96PN7 1200 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 ELP3Q9H9T3 547 aa7.74□□□□□ -1.17
CCDC54-201ENST00000261058 CDC14CA4D256 554 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 CD33P20138 364 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 PLCB3Q01970 1234 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 SPEM2Q0P670 501 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 ENOX2Q16206 610 aaKnown RBP7.73□□□□□ -1.17
CCDC54-201ENST00000261058 FOXR1Q6PIV2 292 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 NLRP13Q86W25 1043 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 TMC1Q8TDI8 760 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 SLC30A3Q99726 388 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 NIF3L1Q9GZT8 377 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 TMEM63CQ9P1W3 806 aa7.73□□□□□ -1.17
CCDC54-201ENST00000261058 LOC100996750A0A140TA64 210 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms