RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 NEK4P51957 841 aa20.53■□□□□ 0.88
FOXA1-201ENST00000250448 TMX3Q96JJ7 454 aa20.53■□□□□ 0.88
FOXA1-201ENST00000250448 ATG3Q9NT62 314 aa20.53■□□□□ 0.88
FOXA1-201ENST00000250448 LRP6O75581 1613 aa20.53■□□□□ 0.88
FOXA1-201ENST00000250448 ZNF330Q9Y3S2 320 aaPredicted RBP20.53■□□□□ 0.88
FOXA1-201ENST00000250448 PXDNLA1KZ92 1463 aa20.53■□□□□ 0.88
FOXA1-201ENST00000250448 MBD3O95983 291 aa20.52■□□□□ 0.88
FOXA1-201ENST00000250448 MCM2P49736 904 aa20.52■□□□□ 0.88
FOXA1-201ENST00000250448 MARCH10Q8NA82 808 aaPredicted RBP20.52■□□□□ 0.88
FOXA1-201ENST00000250448 TNS2Q63HR2 1409 aa20.52■□□□□ 0.88
FOXA1-201ENST00000250448 SYCE3A1L190 88 aa20.52■□□□□ 0.88
FOXA1-201ENST00000250448 TERF1P54274 439 aa20.52■□□□□ 0.88
FOXA1-201ENST00000250448 EXOC6BQ9Y2D4 811 aa20.52■□□□□ 0.88
FOXA1-201ENST00000250448 ITGB4P16144 1822 aa20.52■□□□□ 0.87
FOXA1-201ENST00000250448 ZNF500O60304 480 aaPredicted RBP20.52■□□□□ 0.87
FOXA1-201ENST00000250448 FOXD4L5Q5VV16 416 aaPredicted RBP20.52■□□□□ 0.87
FOXA1-201ENST00000250448 FOXD4L4Q8WXT5 416 aaPredicted RBP20.52■□□□□ 0.87
FOXA1-201ENST00000250448 ESYT1Q9BSJ8 1104 aa20.52■□□□□ 0.87
FOXA1-201ENST00000250448 NSFL1CQ9UNZ2 370 aaKnown RBP20.52■□□□□ 0.87
FOXA1-201ENST00000250448 DDX58O95786 925 aaKnown RBP20.51■□□□□ 0.87
FOXA1-201ENST00000250448 JARID2Q92833 1246 aaPredicted RBP20.51■□□□□ 0.87
FOXA1-201ENST00000250448 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.51■□□□□ 0.87
FOXA1-201ENST00000250448 WNK3Q9BYP7 1800 aa20.51■□□□□ 0.87
FOXA1-201ENST00000250448 SALL3Q9BXA9 1300 aa20.51■□□□□ 0.87
FOXA1-201ENST00000250448 BCL9LQ86UU0 1499 aa20.51■□□□□ 0.87
FOXA1-201ENST00000250448 DNAJC10Q8IXB1 793 aa20.51■□□□□ 0.87
FOXA1-201ENST00000250448 MYD88Q99836 296 aa20.51■□□□□ 0.87
FOXA1-201ENST00000250448 UBR2Q8IWV8 1755 aa20.5■□□□□ 0.87
FOXA1-201ENST00000250448 BRD1O95696 1058 aa20.5■□□□□ 0.87
FOXA1-201ENST00000250448 MCCP23508 829 aa20.5■□□□□ 0.87
FOXA1-201ENST00000250448 CUL4AQ13619 759 aa20.5■□□□□ 0.87
FOXA1-201ENST00000250448 ANKRD13DQ6ZTN6 518 aa20.5■□□□□ 0.87
FOXA1-201ENST00000250448 C9orf78Q9NZ63 289 aaPredicted RBP20.5■□□□□ 0.87
FOXA1-201ENST00000250448 THRAP3Q9Y2W1 955 aaKnown RBP20.5■□□□□ 0.87
FOXA1-201ENST00000250448 IGKV5-2P06315 115 aa20.49■□□□□ 0.87
FOXA1-201ENST00000250448 TTLL7Q6ZT98 887 aa20.49■□□□□ 0.87
FOXA1-201ENST00000250448 TSHZ3Q63HK5 1081 aa20.49■□□□□ 0.87
FOXA1-201ENST00000250448 PAPPAQ13219 1627 aa20.48■□□□□ 0.87
FOXA1-201ENST00000250448 ATP5J2-PTCD1G3V325 749 aa20.48■□□□□ 0.87
FOXA1-201ENST00000250448 SLC4A9Q96Q91 983 aa20.48■□□□□ 0.87
FOXA1-201ENST00000250448 USP21Q9UK80 565 aa20.48■□□□□ 0.87
FOXA1-201ENST00000250448 ZKSCAN5Q9Y2L8 839 aa20.48■□□□□ 0.87
FOXA1-201ENST00000250448 N4BP2Q86UW6 1770 aaPredicted RBP20.48■□□□□ 0.87
FOXA1-201ENST00000250448 MEX3CQ5U5Q3 659 aaKnown RBP20.48■□□□□ 0.87
FOXA1-201ENST00000250448 NWD2Q9ULI1 1742 aa20.48■□□□□ 0.87
FOXA1-201ENST00000250448 PDCL3Q9H2J4 239 aa20.48■□□□□ 0.87
FOXA1-201ENST00000250448 BCL9O00512 1426 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 ATP8B2P98198 1209 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 CDCA7Q9BWT1 371 aaPredicted RBP20.47■□□□□ 0.87
FOXA1-201ENST00000250448 PALD1Q9ULE6 856 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 ANAPC15P60006 121 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 FAM182BQ5T319 152 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 PPP1R42Q7Z4L9 355 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 LINS1Q8NG48 757 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 LRRCC1Q9C099 1032 aa20.47■□□□□ 0.87
FOXA1-201ENST00000250448 R3HCC1Q9Y3T6 440 aaKnown RBP20.47■□□□□ 0.87
FOXA1-201ENST00000250448 MX1P20591 662 aa20.46■□□□□ 0.87
FOXA1-201ENST00000250448 KCNQ2O43526 872 aa20.46■□□□□ 0.87
FOXA1-201ENST00000250448 MCM5P33992 734 aa20.46■□□□□ 0.87
FOXA1-201ENST00000250448 INTS4Q96HW7 963 aaKnown RBP20.46■□□□□ 0.87
FOXA1-201ENST00000250448 ZBTB3Q9H5J0 574 aa20.46■□□□□ 0.87
FOXA1-201ENST00000250448 CCDC39Q9UFE4 941 aa20.46■□□□□ 0.87
FOXA1-201ENST00000250448 LAMB4A4D0S4 1761 aa20.46■□□□□ 0.87
FOXA1-201ENST00000250448 DOT1LQ8TEK3 1739 aa20.46■□□□□ 0.87
FOXA1-201ENST00000250448 CHMLP26374 656 aa20.45■□□□□ 0.86
FOXA1-201ENST00000250448 BARGINQ6ZT62 677 aa20.45■□□□□ 0.86
FOXA1-201ENST00000250448 ANO2Q9NQ90 1003 aa20.45■□□□□ 0.86
FOXA1-201ENST00000250448 ALDH1L1O75891 902 aa20.44■□□□□ 0.86
FOXA1-201ENST00000250448 VPS72Q15906 364 aa20.44■□□□□ 0.86
FOXA1-201ENST00000250448 FNBP4Q8N3X1 1017 aaPredicted RBP20.44■□□□□ 0.86
FOXA1-201ENST00000250448 METTL22Q9BUU2 404 aaPredicted RBP20.44■□□□□ 0.86
FOXA1-201ENST00000250448 NEURL1BA8MQ27 555 aa20.44■□□□□ 0.86
FOXA1-201ENST00000250448 SRGAP3O43295 1099 aa20.44■□□□□ 0.86
FOXA1-201ENST00000250448 NEXNQ0ZGT2 675 aa20.44■□□□□ 0.86
FOXA1-201ENST00000250448 SPATA31A6Q5VVP1 1343 aa20.44■□□□□ 0.86
FOXA1-201ENST00000250448 TAF7LQ5H9L4 462 aa20.44■□□□□ 0.86
FOXA1-201ENST00000250448 NOL8Q76FK4 1167 aaKnown RBP20.44■□□□□ 0.86
FOXA1-201ENST00000250448 GRM8O00222 908 aa20.43■□□□□ 0.86
FOXA1-201ENST00000250448 TRIM6-TRIM34B2RNG4 842 aa20.43■□□□□ 0.86
FOXA1-201ENST00000250448 RNF214Q8ND24 703 aa20.43■□□□□ 0.86
FOXA1-201ENST00000250448 RILPL2Q969X0 211 aa20.43■□□□□ 0.86
FOXA1-201ENST00000250448 SUCLG2Q96I99 432 aa20.43■□□□□ 0.86
FOXA1-201ENST00000250448 TSPY26PQ9H489 355 aa20.43■□□□□ 0.86
FOXA1-201ENST00000250448 SYAP1Q96A49 352 aaPredicted RBP20.42■□□□□ 0.86
FOXA1-201ENST00000250448 IL17RAQ96F46 866 aa20.42■□□□□ 0.86
FOXA1-201ENST00000250448 CSPP1Q1MSJ5 1256 aa20.42■□□□□ 0.86
FOXA1-201ENST00000250448 PTF1AQ7RTS3 328 aa20.41■□□□□ 0.86
FOXA1-201ENST00000250448 GCKRQ14397 625 aa20.41■□□□□ 0.86
FOXA1-201ENST00000250448 KAZALD1Q96I82 304 aa20.41■□□□□ 0.86
FOXA1-201ENST00000250448 STAP2Q9UGK3 403 aa20.41■□□□□ 0.86
FOXA1-201ENST00000250448 PLBD2Q8NHP8 589 aa20.4■□□□□ 0.86
FOXA1-201ENST00000250448 SURF6O75683 361 aaKnown RBP20.4■□□□□ 0.86
FOXA1-201ENST00000250448 AFF2P51816 1311 aa20.4■□□□□ 0.86
FOXA1-201ENST00000250448 SSH3Q8TE77 659 aa20.4■□□□□ 0.86
FOXA1-201ENST00000250448 BICC1Q9H694 974 aaKnown RBP20.4■□□□□ 0.86
FOXA1-201ENST00000250448 IL1RAPL2Q9NP60 686 aa20.4■□□□□ 0.86
FOXA1-201ENST00000250448 UBE3BQ7Z3V4 1068 aa20.39■□□□□ 0.85
FOXA1-201ENST00000250448 UPF3BQ9BZI7 483 aaKnown RBP20.39■□□□□ 0.85
FOXA1-201ENST00000250448 PA2G4Q9UQ80 394 aaKnown RBP20.39■□□□□ 0.85
FOXA1-201ENST00000250448 AOX1Q06278 1338 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms