RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 ZNF853P0CG23 659 aa12.71□□□□□ -0.38
MSH6-201ENST00000234420 GNAI1P63096 354 aa12.71□□□□□ -0.38
MSH6-201ENST00000234420 ANO10Q9NW15 660 aa12.71□□□□□ -0.38
MSH6-201ENST00000234420 TDRD12Q587J7 1177 aaKnown RBP12.7□□□□□ -0.38
MSH6-201ENST00000234420 RAB11FIP4Q86YS3 637 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 CABP5Q9NP86 173 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 TCERG1LQ5VWI1 586 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 FERMT3Q86UX7 667 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 PRKAR2BP31323 418 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 ZSCAN25Q6NSZ9 544 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 SMAP1Q8IYB5 467 aaPredicted RBP12.7□□□□□ -0.38
MSH6-201ENST00000234420 SMC6Q96SB8 1091 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 PKD2L1Q9P0L9 805 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 GNAI2P04899 355 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 GABPAQ06546 454 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 CHRNA2Q15822 529 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 STIM2Q9P246 746 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 EHMT1Q9H9B1 1298 aa12.7□□□□□ -0.38
MSH6-201ENST00000234420 LUC7L2Q9Y383 392 aaKnown RBP12.7□□□□□ -0.38
MSH6-201ENST00000234420 CCDC155Q8N6L0 562 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 RUNDC1Q96C34 613 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 TMEM110-MUSTN1A8MSY1 372 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 FOXO3O43524 673 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 LPXNO60711 386 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 MCM5P33992 734 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 CLCN1P35523 988 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 ANAPC4Q9UJX5 808 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 SORBS3O60504 671 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 CEBPAP49715 358 aaPredicted RBP12.69□□□□□ -0.38
MSH6-201ENST00000234420 FKBP15Q5T1M5 1219 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 CEP126Q9P2H0 1117 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 BUB1BO60566 1050 aaPredicted RBP12.69□□□□□ -0.38
MSH6-201ENST00000234420 NBPF6Q5VWK0 638 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 NBPF5PQ86XG9 351 aaPredicted RBP12.69□□□□□ -0.38
MSH6-201ENST00000234420 CERS3Q8IU89 383 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 NBPF4Q96M43 638 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 NACA2Q9H009 215 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 IL1RAPL2Q9NP60 686 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 NOB1Q9ULX3 412 aaKnown RBP12.69□□□□□ -0.38
MSH6-201ENST00000234420 PARP3Q9Y6F1 533 aa12.69□□□□□ -0.38
MSH6-201ENST00000234420 SKIV2LQ15477 1246 aaKnown RBP12.68□□□□□ -0.38
MSH6-201ENST00000234420 CCDC174Q6PII3 467 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 CPLX4Q7Z7G2 160 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 CCDC171Q6TFL3 1326 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 SELENOSQ9BQE4 189 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 ZNF287Q9HBT7 754 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 ODF2LQ9ULJ1 636 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 PPP1R12AO14974 1030 aaPredicted RBP12.68□□□□□ -0.38
MSH6-201ENST00000234420 ATP6V1AP38606 617 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 GCKP35557 465 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 ALS2CR12Q96Q35 445 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 TNIKQ9UKE5 1360 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 RAPGEF3O95398 923 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 ATF7IPQ6VMQ6 1270 aa12.68□□□□□ -0.38
MSH6-201ENST00000234420 MAP2K2P36507 400 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 TSR2Q969E8 191 aaKnown RBP12.67□□□□□ -0.38
MSH6-201ENST00000234420 PDRG1Q9NUG6 133 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 NEMFO60524 1076 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 ABL1P00519 1130 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 ISM2Q6H9L7 571 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 NBPF11Q86T75 865 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 LMNTD2Q8IXW0 634 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 LARP6Q9BRS8 491 aaKnown RBP12.67□□□□□ -0.38
MSH6-201ENST00000234420 IRAK4Q9NWZ3 460 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 IKBKGQ9Y6K9 419 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 FAM170AA1A519 330 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 HIP1O00291 1037 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 TACC1O75410 805 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 CALM1P0DP23 149 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 CALM2P0DP24 149 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 CALM3P0DP25 149 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 PPFIBP2Q8ND30 876 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 CABP1Q9NZU7 370 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 GSDMDP57764 484 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 LACTBP83111 547 aaPredicted RBP12.67□□□□□ -0.38
MSH6-201ENST00000234420 YEATS4O95619 227 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 NOLC1Q14978 699 aaKnown RBP eCLIP12.67□□□□□ -0.38
MSH6-201ENST00000234420 CCDC117Q8IWD4 279 aaPredicted RBP12.67□□□□□ -0.38
MSH6-201ENST00000234420 NAPBQ9H115 298 aa12.67□□□□□ -0.38
MSH6-201ENST00000234420 CKAP4Q07065 602 aaKnown RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 ZYXQ15942 572 aaKnown RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 AP1ARQ63HQ0 302 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 VPS36Q86VN1 386 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 NCBP1Q09161 790 aaKnown RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 AAMPQ13685 434 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 CEP128Q6ZU80 1094 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 FNBP4Q8N3X1 1017 aaPredicted RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 ZBTB3Q9H5J0 574 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 GPHNQ9NQX3 736 aaPredicted RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 HDAC9Q9UKV0 1011 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 DDX27Q96GQ7 796 aaKnown RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 JAKMIP1Q96N16 626 aaKnown RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 GNL1P36915 607 aaPredicted RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 JDP2Q8WYK2 163 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 HARSP12081 509 aaKnown RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 CDCA7LQ96GN5 454 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 OPA1O60313 960 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 TSNARE1Q96NA8 513 aa12.66□□□□□ -0.38
MSH6-201ENST00000234420 RBM27Q9P2N5 1060 aaKnown RBP12.66□□□□□ -0.38
MSH6-201ENST00000234420 RPAINQ86UA6 219 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms