RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 RTL5Q5HYW3 569 aaPredicted RBP22.36■■□□□ 1.17
VIM-201ENST00000224237 ZNF772Q68DY9 489 aaPredicted RBP22.36■■□□□ 1.17
VIM-201ENST00000224237 DZIP3Q86Y13 1208 aaKnown RBP22.36■■□□□ 1.17
VIM-201ENST00000224237 TBC1D2BQ9UPU7 963 aa22.36■■□□□ 1.17
VIM-201ENST00000224237 MX1P20591 662 aa22.35■■□□□ 1.17
VIM-201ENST00000224237 IL1RAPL2Q9NP60 686 aa22.35■■□□□ 1.17
VIM-201ENST00000224237 PA2G4Q9UQ80 394 aaKnown RBP22.35■■□□□ 1.17
VIM-201ENST00000224237 KRT27Q7Z3Y8 459 aa22.34■■□□□ 1.17
VIM-201ENST00000224237 NUP98P52948 1817 aa22.34■■□□□ 1.17
VIM-201ENST00000224237 AOX1Q06278 1338 aa22.33■■□□□ 1.17
VIM-201ENST00000224237 RBM6P78332 1123 aaKnown RBP22.33■■□□□ 1.17
VIM-201ENST00000224237 G3BP1Q13283 466 aaKnown RBP eCLIP22.33■■□□□ 1.17
VIM-201ENST00000224237 STAP2Q9UGK3 403 aa22.33■■□□□ 1.17
VIM-201ENST00000224237 COPRSQ9NQ92 184 aa22.32■■□□□ 1.16
VIM-201ENST00000224237 CDC45O75419 566 aa22.32■■□□□ 1.16
VIM-201ENST00000224237 GPTP24298 496 aa22.32■■□□□ 1.16
VIM-201ENST00000224237 FOXO4P98177 505 aa22.32■■□□□ 1.16
VIM-201ENST00000224237 PCCAP05165 728 aaPredicted RBP22.31■■□□□ 1.16
VIM-201ENST00000224237 CLASRPQ8N2M8 674 aaKnown RBP22.31■■□□□ 1.16
VIM-201ENST00000224237 LY75O60449 1722 aa22.31■■□□□ 1.16
VIM-201ENST00000224237 RFX5P48382 616 aaPredicted RBP22.3■■□□□ 1.16
VIM-201ENST00000224237 LMBR1LQ6UX01 489 aa22.3■■□□□ 1.16
VIM-201ENST00000224237 ZBTB38Q8NAP3 1195 aaPredicted RBP22.3■■□□□ 1.16
VIM-201ENST00000224237 IPO9Q96P70 1041 aaKnown RBP22.3■■□□□ 1.16
VIM-201ENST00000224237 MSH5O43196 834 aa22.3■■□□□ 1.16
VIM-201ENST00000224237 SMIM5Q71RC9 77 aa22.3■■□□□ 1.16
VIM-201ENST00000224237 NLRP10Q86W26 655 aa22.3■■□□□ 1.16
VIM-201ENST00000224237 CCNL1Q9UK58 526 aaPredicted RBP22.3■■□□□ 1.16
VIM-201ENST00000224237 TUBGCP6Q96RT7 1819 aa22.3■■□□□ 1.16
VIM-201ENST00000224237 CNTNAP4Q9C0A0 1308 aa22.29■■□□□ 1.16
VIM-201ENST00000224237 SDSP20132 328 aa22.29■■□□□ 1.16
VIM-201ENST00000224237 PTPN12Q05209 780 aaKnown RBP22.29■■□□□ 1.16
VIM-201ENST00000224237 TBC1D9Q6ZT07 1266 aa22.29■■□□□ 1.16
VIM-201ENST00000224237 BCL11BQ9C0K0 894 aaPredicted RBP22.29■■□□□ 1.16
VIM-201ENST00000224237 EIF5BO60841 1220 aaKnown RBP22.28■■□□□ 1.16
VIM-201ENST00000224237 FBXO41Q8TF61 875 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 PLA2G12BQ9BX93 195 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 CDHR2Q9BYE9 1310 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 MFAP1P55081 439 aaKnown RBP22.28■■□□□ 1.16
VIM-201ENST00000224237 FAM196AQ6ZSG2 479 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 NUTM1Q86Y26 1132 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 KLHDC4Q8TBB5 520 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 ANP32EQ9BTT0 268 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 SIL1Q9H173 461 aa22.28■■□□□ 1.16
VIM-201ENST00000224237 SASH1O94885 1247 aa22.27■■□□□ 1.16
VIM-201ENST00000224237 TSHZ3Q63HK5 1081 aa22.27■■□□□ 1.16
VIM-201ENST00000224237 DDRGK1Q96HY6 314 aa22.27■■□□□ 1.16
VIM-201ENST00000224237 TBC1D32Q96NH3 1257 aa22.27■■□□□ 1.16
VIM-201ENST00000224237 CHMP3Q9Y3E7 222 aa22.27■■□□□ 1.16
VIM-201ENST00000224237 TRIM37O94972 964 aa22.26■■□□□ 1.15
VIM-201ENST00000224237 CAMTA2O94983 1202 aa22.26■■□□□ 1.15
VIM-201ENST00000224237 ZNF34Q8IZ26 560 aa22.26■■□□□ 1.15
VIM-201ENST00000224237 RGS17Q9UGC6 210 aaPredicted RBP22.26■■□□□ 1.15
VIM-201ENST00000224237 USP42Q9H9J4 1324 aaKnown RBP22.26■■□□□ 1.15
VIM-201ENST00000224237 BCORQ6W2J9 1755 aa22.26■■□□□ 1.15
VIM-201ENST00000224237 TAF1LQ8IZX4 1826 aa22.26■■□□□ 1.15
VIM-201ENST00000224237 CASC1Q6TDU7 716 aa22.26■■□□□ 1.15
VIM-201ENST00000224237 FAM89AQ96GI7 184 aa22.26■■□□□ 1.15
VIM-201ENST00000224237 TTC41PQ6P2S7 1318 aa22.25■■□□□ 1.15
VIM-201ENST00000224237 UBN2Q6ZU65 1347 aa22.25■■□□□ 1.15
VIM-201ENST00000224237 RC3H1Q5TC82 1133 aaKnown RBP22.25■■□□□ 1.15
VIM-201ENST00000224237 SYNE4Q8N205 404 aa22.25■■□□□ 1.15
VIM-201ENST00000224237 IFIT2P09913 472 aaKnown RBP22.24■■□□□ 1.15
VIM-201ENST00000224237 GPATCH3Q96I76 525 aa22.24■■□□□ 1.15
VIM-201ENST00000224237 RXRBP28702 533 aa22.24■■□□□ 1.15
VIM-201ENST00000224237 ZNF652Q9Y2D9 606 aa22.24■■□□□ 1.15
VIM-201ENST00000224237 AACSQ86V21 672 aa22.23■■□□□ 1.15
VIM-201ENST00000224237 AMIGO3Q86WK7 504 aa22.23■■□□□ 1.15
VIM-201ENST00000224237 PI4K2BQ8TCG2 481 aa22.23■■□□□ 1.15
VIM-201ENST00000224237 TRMT112Q9UI30 125 aaKnown RBP22.23■■□□□ 1.15
VIM-201ENST00000224237 C22orf23Q9BZE7 217 aa22.22■■□□□ 1.15
VIM-201ENST00000224237 LRRC4BQ9NT99 713 aa22.22■■□□□ 1.15
VIM-201ENST00000224237 ERC2O15083 957 aa22.22■■□□□ 1.15
VIM-201ENST00000224237 GNPATO15228 680 aa22.22■■□□□ 1.15
VIM-201ENST00000224237 PARP10Q53GL7 1025 aa22.22■■□□□ 1.15
VIM-201ENST00000224237 MYH3P11055 1940 aa22.21■■□□□ 1.15
VIM-201ENST00000224237 RGL2O15211 777 aa22.21■■□□□ 1.15
VIM-201ENST00000224237 CSF1RP07333 972 aa22.21■■□□□ 1.15
VIM-201ENST00000224237 POTEAQ6S8J7 498 aa22.21■■□□□ 1.15
VIM-201ENST00000224237 CLEC4GQ6UXB4 293 aa22.21■■□□□ 1.15
VIM-201ENST00000224237 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.21■■□□□ 1.15
VIM-201ENST00000224237 TRIM6-TRIM34B2RNG4 842 aa22.2■■□□□ 1.14
VIM-201ENST00000224237 GLRX3O76003 335 aaKnown RBP22.2■■□□□ 1.14
VIM-201ENST00000224237 CCDC57Q2TAC2 916 aa22.2■■□□□ 1.14
VIM-201ENST00000224237 EAF2Q96CJ1 260 aaPredicted RBP22.2■■□□□ 1.14
VIM-201ENST00000224237 ECHDC1Q9NTX5 307 aa22.2■■□□□ 1.14
VIM-201ENST00000224237 C4BP0C0L5 1744 aa22.2■■□□□ 1.14
VIM-201ENST00000224237 IRS4O14654 1257 aaPredicted RBP22.2■■□□□ 1.14
VIM-201ENST00000224237 SCN7AQ01118 1682 aa22.2■■□□□ 1.14
VIM-201ENST00000224237 FAM177BA6PVY3 158 aa22.19■■□□□ 1.14
VIM-201ENST00000224237 RPS6KA4O75676 772 aa22.19■■□□□ 1.14
VIM-201ENST00000224237 AK7Q96M32 723 aa22.19■■□□□ 1.14
VIM-201ENST00000224237 FBXO3Q9UK99 471 aa22.19■■□□□ 1.14
VIM-201ENST00000224237 IL15P40933 162 aaPredicted RBP22.18■■□□□ 1.14
VIM-201ENST00000224237 RILPL2Q969X0 211 aa22.18■■□□□ 1.14
VIM-201ENST00000224237 SH3TC1Q8TE82 1336 aa22.18■■□□□ 1.14
VIM-201ENST00000224237 PDE8AO60658 829 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 CIAO1O76071 339 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 CTSWP56202 376 aa22.17■■□□□ 1.14
VIM-201ENST00000224237 TFCP2Q12800 502 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms