RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CMSS1Q9BQ75 279 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 LINC00597Q9H2U6 94 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ALG9Q9H6U8 611 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TMEM185BQ9H7F4 350 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PNPOQ9NVS9 261 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TMEM248Q9NWD8 314 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 HCFC1R1Q9NWW0 138 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ZNF490Q9ULM2 529 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 TMED3Q9Y3Q3 217 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PIK3C2BO00750 1634 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 SMCO3A2RU48 225 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 HMX3A6NHT5 357 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 B8ZZF3 427 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TRAPPC2LH3BP13 241 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 K7EQM0 130 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 HRO43593 1189 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 OR7A10O76100 309 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 HPP00738 406 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 IGHG1P01857 330 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CHRNGP07510 517 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 SEC11BP0C7V7 166 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 RPS2P15880 293 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 ATP4BP51164 291 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 GBX2P52951 348 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 RIPPLY3P57055 190 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 RPS14P62263 151 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 DSC2Q02487 901 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 EMX1Q04741 257 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 PJVKQ0ZLH3 352 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TRAF2Q12933 501 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 DPYSL3Q14195 570 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 MICAQ29983 383 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 RFX4Q33E94 735 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 C4orf46Q504U0 113 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 C1orf185Q5T7R7 199 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TCTN3Q6NUS6 607 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CPEB2Q7Z5Q1 589 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 LACC1Q8IV20 430 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 FAM109AQ8N4B1 249 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 C1orf127Q8N9H9 656 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 FBLIM1Q8WUP2 373 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TRIB3Q96RU7 358 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PLEKHF1Q96S99 279 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 S1PR3Q99500 378 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ATG101Q9BSB4 218 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 NIPAL2Q9H841 368 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PLEKHA3Q9HB20 300 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 BEX1Q9HBH7 125 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 LANCL2Q9NS86 450 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 RASD1Q9Y272 281 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CFAP20Q9Y6A4 193 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 LRRN3E7EW58 273 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PRAMEF11O60813 436 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PRKD3O94806 890 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 KITP10721 976 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 GABRR1P24046 479 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CDK3Q00526 305 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 RTP5Q14D33 572 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TAB1Q15750 504 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ANKRD55Q3KP44 614 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 RABL3Q5HYI8 236 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 SLC23A3Q6PIS1 610 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ZNF813Q6ZN06 617 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 H1FNTQ75WM6 255 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 TIPARPQ7Z3E1 657 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 GALNTL5Q7Z4T8 443 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 OR2T12Q8NG77 320 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 OR7G1Q8NGA0 311 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 OR6K6Q8NGW6 343 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 CLEC4DQ8WXI8 215 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 EXTL1Q92935 676 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 PEX13Q92968 403 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 SLC25A28Q96A46 364 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 BIRC7Q96CA5 298 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ARSGQ96EG1 525 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ROPN1BQ9BZX4 212 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 PLK3Q9H4B4 646 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 ROPN1Q9HAT0 212 aaPredicted RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 CD93Q9NPY3 652 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 DHCR7Q9UBM7 475 aaKnown RBP3.84□□□□□ -1.79
USH2A-202ENST00000366942 ZMIZ1Q9ULJ6 1067 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 SSUH2Q9Y2M2 353 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 KCNIP3Q9Y2W7 256 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 TMED5Q9Y3A6 229 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 OR1A2Q9Y585 309 aa3.84□□□□□ -1.79
USH2A-202ENST00000366942 A0A1B0GUS0 222 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 MDFIC2A0A1B0GVS7 189 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 PRAMEF25A6NGN4 478 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 YIF1AO95070 293 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 ACTL6AO96019 429 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 FAM153BP0C7A2 387 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 T-ENOLP0DO92 83 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 ACP2P11117 423 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CALB2P22676 271 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CASP1P29466 404 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 GABRA3P34903 492 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 RAB14P61106 215 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 CCL7P80098 99 aa3.84□□□□□ -1.8
USH2A-202ENST00000366942 HTRA4P83105 476 aaPredicted RBP3.84□□□□□ -1.8
USH2A-202ENST00000366942 CDK5Q00535 292 aa3.84□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms