RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LIPT1Q9Y234 373 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 C15orf38-AP3S2A0A0A6YYH1 394 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 G3V3Y1 287 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 UTS2O95399 124 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 P04436 131 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 BCHEP06276 602 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 CYP51A1Q16850 503 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 SLC25A25Q6KCM7 469 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 ARPINQ7Z6K5 226 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 ANKFN1Q8N957 763 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 TMEM178AQ8NBL3 297 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 FBXO27Q8NI29 283 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 NSL1Q96IY1 281 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 METTL7AQ9H8H3 244 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 CNIH4Q9P003 139 aa27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 CNOT11Q9UKZ1 510 aaKnown RBP27.18■■□□□ 1.94
LIMCH1-211ENST00000509638 NINQ8N4C6 2090 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 A0A0G2JMM0 328 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 A0A1W2PPB8 328 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 A0A1W2PRS3 328 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 KIR3DP1A8MWS1 328 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 STX11O75558 287 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 UBOX5O94941 541 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 ZIC2O95409 532 aaPredicted RBP27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 NR2F1P10589 423 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 CALB2P22676 271 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 GPR85P60893 370 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 FLYWCH1Q4VC44 716 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 C8orf82Q6P1X6 216 aaPredicted RBP27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 GALNTL5Q7Z4T8 443 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 PNPLA2Q96AD5 504 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 TRNT1Q96Q11 434 aaKnown RBP27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 A4GALTQ9NPC4 353 aa27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 KLF13Q9Y2Y9 288 aaPredicted RBP27.17■■□□□ 1.94
LIMCH1-211ENST00000509638 FAM208BQ5VWN6 2430 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 PRAMEF25A6NGN4 478 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 CCT8L1PA6NM43 557 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 SLC28A2O43868 658 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 H6PDO95479 791 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 CHRM4P08173 479 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 EVI2BP34910 448 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 MNAT1P51948 309 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 MXRA7P84157 204 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 GRAMD1BQ3KR37 738 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 COLEC12Q5KU26 742 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 PTRH1Q86Y79 214 aaKnown RBP27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 TEX19Q8NA77 164 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 OR10A6Q8NH74 314 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 SLC38A5Q8WUX1 472 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 HOPXQ9BPY8 73 aaPredicted RBP27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 DEPPQ9NTK1 212 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 KLRF1Q9NZS2 232 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 WDR45Q9Y484 360 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 PCDHGB6Q9Y5F9 930 aa27.16■■□□□ 1.94
LIMCH1-211ENST00000509638 NPIPA5A0A0B4J1W7 369 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 TMEM247A6NEH6 219 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 NPIPA7E9PJI5 369 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 FCMRO60667 390 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 NPIPA8P0DM63 369 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 CASP3P42574 277 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 SLC7A2P52569 658 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 MAPK11Q15759 364 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 PLEKHN1Q494U1 663 aaPredicted RBP27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 GRHL3Q8TE85 626 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 RUBCNLQ9H714 662 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 MKLN1Q9UL63 735 aa27.15■■□□□ 1.94
LIMCH1-211ENST00000509638 TFPTP0C1Z6 253 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 T-ENOLP0DO92 83 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 LCN1P31025 176 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 KLRB1Q12918 225 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 TYW3Q6IPR3 259 aaKnown RBP27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 FRRS1Q6ZNA5 592 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 SERPINA11Q86U17 422 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 OR4C3Q8NH37 302 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 TMEM19Q96HH6 336 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 ECSITQ9BQ95 431 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 OSBPL11Q9BXB4 747 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 GALNT9Q9HCQ5 603 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 ABCG2Q9UNQ0 655 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 CFAP46Q8IYW2 2715 aa27.14■■□□□ 1.94
LIMCH1-211ENST00000509638 KIAA0513O60268 411 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 ARAFP10398 606 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 DCTP40126 519 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 PSME3P61289 254 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 GPR68Q15743 365 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 ADRM1Q16186 407 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 TMEM81Q6P7N7 255 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 RNF138Q8WVD3 245 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 DOHHQ9BU89 302 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 SLC38A1Q9H2H9 487 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 PIF1Q9H611 641 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 TMEM38AQ9H6F2 299 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 POLE3Q9NRF9 147 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 UBQLN4Q9NRR5 601 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 CMTM6Q9NX76 183 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 L3MBTL1Q9Y468 752 aa27.14■■□□□ 1.93
LIMCH1-211ENST00000509638 SCO2O43819 266 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 OXSR1O95747 527 aaPredicted RBP27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 DNASE1L1P49184 302 aa27.13■■□□□ 1.93
LIMCH1-211ENST00000509638 CRISP3P54108 245 aa27.13■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms