RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 DKKL1Q9UK85 242 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 FBXL2Q9UKC9 423 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 HIVEP1P15822 2718 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 MED12LQ86YW9 2145 aa17.32■□□□□ 0.36
CCDC28A-203ENST00000617445 KDM4EB2RXH2 506 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 LINC01387J3KSC0 135 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 ZIC3O60481 467 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 NME6O75414 186 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 IL33O95760 270 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 DPP4P27487 766 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 ASMTP46597 345 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 GAB1Q13480 694 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 GANABQ14697 944 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 TESK1Q15569 626 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 SH2D4BQ5SQS7 431 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 SPNS3Q6ZMD2 512 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 TRABD2AQ86V40 505 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 CEP70Q8NHQ1 597 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 GOT1L1Q8NHS2 421 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 ZFP28Q8NHY6 868 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 ZBED6CLQ96FA7 236 aaPredicted RBP17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 EGLN2Q96KS0 407 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 SFXN2Q96NB2 322 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 TUBA1CQ9BQE3 449 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 REEP4Q9H6H4 257 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 ANKZF1Q9H8Y5 726 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 FAM120CQ9NX05 1096 aaKnown RBP17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 PPP4R1LQ9P1A2 415 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 ABCA4P78363 2273 aa17.31■□□□□ 0.36
CCDC28A-203ENST00000617445 KIAA1549Q9HCM3 1950 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 PDPK1O15530 556 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 FADS1O60427 444 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 CTAG2O75638 210 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 RCBTB2O95199 551 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 TMIGD3P0DMS9 266 aaPredicted RBP17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 PRPS2P11908 318 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 POU3F2P20265 443 aaPredicted RBP17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 TACR1P25103 407 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 SERPINB5P36952 375 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 LHX2P50458 406 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 DGKQP52824 942 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 WNT3P56703 355 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 SORDQ00796 357 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 IFFO1Q0D2I5 559 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 VPS26BQ4G0F5 336 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 FLYWCH1Q4VC44 716 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 KANK2Q63ZY3 851 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 OR5M10Q6IEU7 315 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 FADS6Q8N9I5 356 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 MTERF3Q96E29 417 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 SFXN3Q9BWM7 321 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 PTGES2Q9H7Z7 377 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 ACSS1Q9NUB1 689 aaPredicted RBP17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 JKAMPQ9P055 326 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 LGALS13Q9UHV8 139 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 EDARQ9UNE0 448 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 DNAJC15Q9Y5T4 150 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 MED13LQ71F56 2210 aa17.3■□□□□ 0.36
CCDC28A-203ENST00000617445 CELSR1Q9NYQ6 3014 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 FAM221AA4D161 298 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 KCNH1O95259 989 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 PEPDP12955 493 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 ZNF708P17019 499 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 GPC1P35052 558 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 MANFP55145 182 aaKnown RBP17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 SRYQ05066 204 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 RFTN2Q52LD8 501 aaPredicted RBP17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 LRIG3Q6UXM1 1119 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 CHMP1BQ7LBR1 199 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 R3HCC1LQ7Z5L2 792 aaKnown RBP17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 ZZZ3Q8IYH5 903 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 C9orf106Q8NAJ2 232 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 HOXB13Q92826 284 aaPredicted RBP17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 PPCDCQ96CD2 204 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 TUBB1Q9H4B7 451 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 DNAJB12Q9NXW2 375 aaKnown RBP17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 CRIM1Q9NZV1 1036 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 NTMQ9P121 344 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 TRAF6Q9Y4K3 522 aa17.29■□□□□ 0.36
CCDC28A-203ENST00000617445 CLCA1A8K7I4 914 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 TMEM114B3SHH9 223 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 LSM1O15116 133 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 SCO2O43819 266 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 GOSR1O95249 250 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 LINC00032P0C843 101 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 CD1EP15812 388 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 SDC1P18827 310 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 ALDH3A1P30838 453 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 GABRA3P34903 492 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 RPL3P39023 403 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 FRKP42685 505 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 CLDN18P56856 261 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 EEFSECP57772 596 aaKnown RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 HSPB3Q12988 150 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 PDE7AQ13946 482 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 DAZAP2Q15038 168 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 GLYR1Q49A26 553 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 ARL13AQ5H913 290 aaPredicted RBP17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 EMBQ6PCB8 327 aa17.28■□□□□ 0.36
CCDC28A-203ENST00000617445 ZCCHC12Q6PEW1 402 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms