RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 OR1C1Q15619 314 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 GPALPP1Q8IXQ4 340 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 HORMAD2Q8N7B1 307 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 SIGLEC12Q96PQ1 595 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 ARL8BQ9NVJ2 186 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 GIN1Q9NXP7 522 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 KCNE3Q9Y6H6 103 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 AIM2O14862 343 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 PPM1BO75688 479 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 UNC5CO95185 931 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 PIGAP37287 484 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 MRPS22P82650 360 aaKnown RBP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 ZNF791Q3KP31 576 aaPredicted RBP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 BCORP1Q8N888 145 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 FAM13CQ8NE31 585 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 OR52N2Q8NGI0 321 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 OR5M3Q8NGP4 307 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 RAB8BQ92930 207 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 EFHD2Q96C19 240 aaPredicted RBP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 SLC35A4Q96G79 324 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 CPPED1Q9BRF8 314 aaPredicted RBP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 TRIM8Q9BZR9 551 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 IKZF5Q9H5V7 419 aa27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 TRIM45Q9H8W5 580 aaPredicted RBP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 RYDENQ9NUL5 291 aaKnown RBP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 PRRC2CQ9Y520 2896 aaKnown RBP27.28■■□□□ 1.96
LIMCH1-211ENST00000509638 CDK2AP1O14519 115 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 ASNA1O43681 348 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 OR12D1P0DN82 309 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 PPIBP23284 216 aaKnown RBP27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 IL12BP29460 328 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 KRT20P35900 424 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 CRATP43155 626 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 RFX3P48380 749 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 TNFSF10P50591 281 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 FBXW4P57775 412 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 DECR1Q16698 335 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 ZNF227Q86WZ6 799 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 HPS6Q86YV9 775 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 DND1Q8IYX4 353 aaKnown RBP27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 LRRC58Q96CX6 371 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 ANKRD27Q96NW4 1050 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 BTBD2Q9BX70 525 aa27.27■■□□□ 1.96
LIMCH1-211ENST00000509638 DUXAA6NLW8 204 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 DPM1O60762 260 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 NEURL1O76050 574 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 ETFAP13804 333 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 CPA2P48052 419 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 NUDT2P50583 147 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 ANXA11P50995 505 aaKnown RBP27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 POU6F2P78424 691 aaPredicted RBP27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 NTRK2Q16620 822 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 SPINK14Q6IE38 97 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 GALNT10Q86SR1 603 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 OR10G3Q8NGC4 313 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 RAD21L1Q9H4I0 556 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 TAGLN3Q9UI15 199 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 EML6Q6ZMW3 1958 aa27.26■■□□□ 1.96
LIMCH1-211ENST00000509638 HMGN4O00479 90 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 REM1O75628 298 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 NPPAP01160 153 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 MTPNP58546 118 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 KRT72Q14CN4 511 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 RUNDC3AQ59EK9 446 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 CCNJQ5T5M9 372 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 FIGNL1Q6PIW4 674 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 RBMXL3Q8N7X1 1067 aaKnown RBP27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 MDS2Q8NDY4 140 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 CATSPER1Q8NEC5 780 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 WBP1Q96G27 269 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 COL21A1Q96P44 957 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 UBL7Q96S82 380 aaPredicted RBP27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 ADOQ96SZ5 270 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 SLC25A18Q9H1K4 315 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 GID8Q9NWU2 228 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 PCDHGB3Q9Y5G1 929 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 GMEB1Q9Y692 573 aa27.26■■□□□ 1.95
LIMCH1-211ENST00000509638 TSPAN2O60636 221 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 SLC25A12O75746 678 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 KCNK2O95069 426 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 AGR2O95994 175 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 IGKV1D-16P01601 117 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 SFTPCP11686 197 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 NAGAP17050 411 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 TXNL4AP83876 142 aaKnown RBP27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 RGNQ15493 299 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 DCST2Q5T1A1 773 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 RTL4Q6ZR62 310 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 TRPM8Q7Z2W7 1104 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 MDGA2Q7Z553 956 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 XAGE5Q8WWM1 108 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 DIO2Q92813 273 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 ROPN1LQ96C74 230 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 SMG1Q96Q15 3661 aaKnown RBP27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 EFCAB1Q9HAE3 211 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 MRTO4Q9UKD2 239 aaKnown RBP27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 CORO2BQ9UQ03 480 aa27.25■■□□□ 1.95
LIMCH1-211ENST00000509638 OR6C70A6NIJ9 312 aa27.24■■□□□ 1.95
LIMCH1-211ENST00000509638 UGT2B11O75310 529 aa27.24■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms