RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 OR6B1O95007 311 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 NADKO95544 446 aaPredicted RBP13.82□□□□□ -0.2
NUP54-213ENST00000513352 CT45A8P0DMV1 189 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 CT45A9P0DMV2 189 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 ABCD3P28288 659 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 IL12BP29460 328 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 PRDX6P30041 224 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 CRATP43155 626 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 CPA2P48052 419 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 TMED10P49755 219 aaKnown RBP13.82□□□□□ -0.2
NUP54-213ENST00000513352 CAPRIN1Q14444 709 aaKnown RBP13.82□□□□□ -0.2
NUP54-213ENST00000513352 DUSP5Q16690 384 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 TRMT5Q32P41 509 aaKnown RBP13.82□□□□□ -0.2
NUP54-213ENST00000513352 CT45A2Q5DJT8 189 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 LRIF1Q5T3J3 769 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 ZCCHC12Q6PEW1 402 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 ASB18Q6ZVZ8 466 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 SLC34A3Q8N130 599 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 CYP4Z2PQ8N1L4 340 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 SLC15A4Q8N697 577 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 SLC16A11Q8NCK7 471 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 FAM13CQ8NE31 585 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 C17orf47Q8NEP4 570 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 DNAJB8Q8NHS0 232 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 ZFP90Q8TF47 636 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 PIK3R3Q92569 461 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 CDS1Q92903 461 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 OMA1Q96E52 524 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 HSPBAP1Q96EW2 488 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 LMF2Q9BU23 707 aaKnown RBP13.82□□□□□ -0.2
NUP54-213ENST00000513352 TPT1P8Q9HAU6 139 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 GID8Q9NWU2 228 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 NPFFR2Q9Y5X5 522 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 K7EM74 188 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 CLIC1O00299 241 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 C1QCP02747 245 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 PDGFAP04085 211 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 OR12D1P0DN82 309 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 PTPN6P29350 595 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 CYB561P49447 251 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 NUDT2P50583 147 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 HLCSP50747 726 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 POU6F2P78424 691 aaPredicted RBP13.81□□□□□ -0.2
NUP54-213ENST00000513352 PSG6Q00889 435 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 ART3Q13508 389 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 TUBA3CQ13748 450 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 DECR1Q16698 335 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 COQ5Q5HYK3 327 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 COX20Q5RI15 118 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.81□□□□□ -0.2
NUP54-213ENST00000513352 ATAD3BQ5T9A4 648 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 ZNF468Q5VIY5 522 aaPredicted RBP13.81□□□□□ -0.2
NUP54-213ENST00000513352 TUBA3EQ6PEY2 450 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 C16orf62Q7Z3J2 963 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 ARMC10Q8N2F6 343 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 DPP10Q8N608 796 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 FITM2Q8N6M3 262 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 OR4N2Q8NGD1 307 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 RAB8BQ92930 207 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 TMBIM1Q969X1 311 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 EFHD2Q96C19 240 aaPredicted RBP13.81□□□□□ -0.2
NUP54-213ENST00000513352 PHF12Q96QT6 1004 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 CGREF1Q99674 301 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 MFRPQ9BY79 579 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 RAD21L1Q9H4I0 556 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 SERHL2Q9H4I8 314 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 ARL8BQ9NVJ2 186 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 SLC25A37Q9NYZ2 338 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 VAPAQ9P0L0 249 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 LRFN1Q9P244 771 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 MAP10Q9P2G4 905 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 TAGLN3Q9UI15 199 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 TUBD1Q9UJT1 453 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 CBLCQ9ULV8 474 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 PCDHGB7Q9Y5F8 929 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 EXPH5Q8NEV8 1989 aa13.81□□□□□ -0.2
NUP54-213ENST00000513352 OR5H15A6NDH6 313 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 DUXAA6NLW8 204 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 EVPLLA8MZ36 301 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 DPM1O60762 260 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 ZNF354AO60765 605 aaPredicted RBP13.8□□□□□ -0.2
NUP54-213ENST00000513352 NKX2-2O95096 273 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 PPIBP23284 216 aaKnown RBP13.8□□□□□ -0.2
NUP54-213ENST00000513352 TRHRP34981 398 aaPredicted RBP13.8□□□□□ -0.2
NUP54-213ENST00000513352 CD96P40200 585 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 FBXW4P57775 412 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 MRPS22P82650 360 aaKnown RBP13.8□□□□□ -0.2
NUP54-213ENST00000513352 MXRA7P84157 204 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 LY6DQ14210 128 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 OR1C1Q15619 314 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 CYP27C1Q4G0S4 372 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 FIGNL1Q6PIW4 674 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 DLEU7Q6UYE1 221 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 GALNT10Q86SR1 603 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 MSRB3Q8IXL7 192 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 HORMAD2Q8N7B1 307 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 EXD3Q8N9H8 876 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 OR52N2Q8NGI0 321 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 XAGE5Q8WWM1 108 aa13.8□□□□□ -0.2
NUP54-213ENST00000513352 TMEM125Q96AQ2 219 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms