RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PLA2G10O15496 165 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 IFNA14P01570 189 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 HRGP04196 525 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 RHOP08100 348 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 CHRM4P08173 479 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 ARAFP10398 606 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 CHRNB1P11230 501 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 RPL35P42766 123 aaKnown RBP8.15□□□□□ -1.11
USP40-203ENST00000427112 CDH11P55287 796 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 CLDN12P56749 244 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 PSPHP78330 225 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 RPL6Q02878 288 aaKnown RBP8.15□□□□□ -1.11
USP40-203ENST00000427112 FNDC1Q4ZHG4 1894 aaPredicted RBP8.15□□□□□ -1.11
USP40-203ENST00000427112 HENMT1Q5T8I9 393 aaKnown RBP8.15□□□□□ -1.11
USP40-203ENST00000427112 FAM71E1Q6IPT2 247 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 RFPL4BQ6ZWI9 263 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 AMIGO1Q86WK6 493 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 KIF18BQ86Y91 864 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 CPOQ8IVL8 374 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 OR8H3Q8N146 312 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 SAMD12Q8N8I0 201 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 SLC37A3Q8NCC5 494 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 TEX47Q8TBZ9 253 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 TMEM255BQ8WV15 326 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 SMPDL3AQ92484 453 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 ARRDC3Q96B67 414 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 TM4SF18Q96CE8 201 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 NUS1Q96E22 293 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 ZBED6CLQ96FA7 236 aaPredicted RBP8.15□□□□□ -1.11
USP40-203ENST00000427112 SAMD8Q96LT4 415 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 ZNF582Q96NG8 517 aaPredicted RBP8.15□□□□□ -1.11
USP40-203ENST00000427112 FAIM2Q9BWQ8 316 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 DPH1Q9BZG8 443 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 LRRN3Q9H3W5 708 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 ATG4BQ9Y4P1 393 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 ASXL3Q9C0F0 2248 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 WDFY4Q6ZS81 3184 aa8.15□□□□□ -1.11
USP40-203ENST00000427112 ERVH48-1M5A8F1 160 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 DOK2O60496 412 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 GATBO75879 557 aaKnown RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 PRG2P13727 222 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 PRKCAP17252 672 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SHC1P29353 583 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 TIE1P35590 1138 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 MRPL19P49406 292 aaKnown RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 OC90Q02509 493 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 PRKCDQ05655 676 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 PUDPQ08623 228 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 POU4F3Q15319 338 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 TIMM50Q3ZCQ8 353 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ZNF542PQ5EBM4 170 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ZNF311Q5JNZ3 666 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 POMZP3Q6PJE2 187 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SLC9B2Q86UD5 537 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 OR4E2Q8NGC2 313 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 OR5H6Q8NGV6 325 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ITPKCQ96DU7 683 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 KCTD7Q96MP8 289 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 FOXN4Q96NZ1 517 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 TEFMQ96QE5 360 aaKnown RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 SRRQ9GZT4 340 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 GLIPR2Q9H4G4 154 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 IGFLR1Q9H665 355 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 H2AFY2Q9P0M6 372 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 EXTL2Q9UBQ6 330 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 REV1Q9UBZ9 1251 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 STUB1Q9UNE7 303 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 POM121CA8CG34 1229 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 J3QLW9 94 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 IMPA2O14732 288 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ZNF19P17023 458 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 TRHRP34981 398 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 NAA10P41227 235 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 HNRNPFP52597 415 aaKnown RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 GALK2Q01415 458 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 MLIPQ5VWP3 458 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 LYPD4Q6UWN0 246 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ZNF433Q8N7K0 673 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 OR8K3Q8NH51 312 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 DEDD2Q8WXF8 326 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 C11orf24Q96F05 449 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 SIGLEC11Q96RL6 698 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 FBXO34Q9NWN3 711 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 HSPE1-MOB4S4R3N1 261 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ARHGEF17Q96PE2 2063 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 A0A087WUU8 490 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SLC5A10A0PJK1 596 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 C4orf51C9J302 202 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 KIAA0355O15063 1070 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SIGLEC5O15389 551 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 RAD1O60671 282 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 TRIM23P36406 574 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 MAPK8P45983 427 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 CCR6P51684 374 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 RGS8P57771 180 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 SIGLEC14Q08ET2 396 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 AGERQ15109 404 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 ZNF630Q2M218 657 aaPredicted RBP8.14□□□□□ -1.11
USP40-203ENST00000427112 PXDC1Q5TGL8 231 aa8.14□□□□□ -1.11
USP40-203ENST00000427112 SFRP4Q6FHJ7 346 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms