RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ASB15Q8WXK1 588 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 ADIPOR1Q96A54 375 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 C16orf58Q96GQ5 468 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 ABHD17AQ96GS6 310 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 LCORQ96JN0 433 aaPredicted RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 VSTM2LQ96N03 204 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 NPAS2Q99743 824 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 TRIM4Q9C037 500 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 PAIP1Q9H074 479 aaKnown RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 SLC52A3Q9NQ40 469 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 SLC6A13Q9NSD5 602 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 ANKRD10Q9NXR5 420 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 ERVK-11Q9UQG0 969 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 TP53TG5Q9Y2B4 290 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 YARS2Q9Y2Z4 477 aaKnown RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 ZNF451Q9Y4E5 1061 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 PCDHGA9Q9Y5G4 932 aaKnown RBP13.85□□□□□ -0.19
NUP54-213ENST00000513352 ZZEF1O43149 2961 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 CNTRLQ7Z7A1 2325 aa13.85□□□□□ -0.19
NUP54-213ENST00000513352 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 FRG2CA6NGY1 282 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 TMEM200CA6NKL6 621 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 PSMG1O95456 288 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 ALOX5P09917 674 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 ACP2P11117 423 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 MATN1P21941 496 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 GABRA3P34903 492 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 KRT20P35900 424 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 PPICP45877 212 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 RFX3P48380 749 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 ARG2P78540 354 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 PLCXD2Q0VAA5 305 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 STX5Q13190 355 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 SAXO2Q658L1 398 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 RETREG3Q86VR2 466 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 PCYOX1LQ8NBM8 494 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 RP9Q8TA86 221 aaKnown RBP13.84□□□□□ -0.19
NUP54-213ENST00000513352 GPR151Q8TDV0 419 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 TM9SF4Q92544 642 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 TTC9Q92623 222 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 RCN3Q96D15 328 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 CMTM5Q96DZ9 223 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 GIMAP5Q96F15 307 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 AURKBQ96GD4 344 aaPredicted RBP13.84□□□□□ -0.19
NUP54-213ENST00000513352 BTBD9Q96Q07 612 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 RASL10BQ96S79 203 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 SMAD5Q99717 465 aaKnown RBP13.84□□□□□ -0.19
NUP54-213ENST00000513352 UTP23Q9BRU9 249 aaKnown RBP13.84□□□□□ -0.19
NUP54-213ENST00000513352 ACTRT3Q9BYD9 372 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 Q9N2J8 555 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 PLA2G3Q9NZ20 509 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 NTMQ9P121 344 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 PCDHB14Q9Y5E9 798 aa13.84□□□□□ -0.19
NUP54-213ENST00000513352 LOC400499M0QZD8 3231 aa13.83□□□□□ -0.19
NUP54-213ENST00000513352 A8MVJ9 347 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 FBP2O00757 339 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 AIM2O14862 343 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 KRT75O95678 551 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 WDPCPO95876 746 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 ZCCHC18P0CG32 403 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 DRD5P21918 477 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 SOX3P41225 446 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 KHKP50053 298 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 ANXA11P50995 505 aaKnown RBP13.83□□□□□ -0.2
NUP54-213ENST00000513352 LACTB2Q53H82 288 aaPredicted RBP13.83□□□□□ -0.2
NUP54-213ENST00000513352 PIGGQ5H8A4 983 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 CDC73Q6P1J9 531 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 TNFAIP8L2Q6P589 184 aaPredicted RBP13.83□□□□□ -0.2
NUP54-213ENST00000513352 OPN5Q6U736 354 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 IL20RBQ6UXL0 311 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 NPSR1Q6W5P4 371 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 RNF130Q86XS8 419 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 ZADH2Q8N4Q0 377 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 COX18Q8N8Q8 333 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 ZNF441Q8N8Z8 693 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 OR5D16Q8NGK9 328 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 OR5M3Q8NGP4 307 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 ADAMTS15Q8TE58 950 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 TP53INP1Q96A56 240 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 NEURL3Q96EH8 262 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 RMND5BQ96G75 393 aaPredicted RBP13.83□□□□□ -0.2
NUP54-213ENST00000513352 OR7D2Q96RA2 312 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 LMF1Q96S06 567 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.83□□□□□ -0.27e-10■■■■■ 34.7
NUP54-213ENST00000513352 ADNPQ9H2P0 1102 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 OR51I1Q9H343 314 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 ZBTB20Q9HC78 741 aaPredicted RBP13.83□□□□□ -0.2
NUP54-213ENST00000513352 ZNF71Q9NQZ8 489 aaPredicted RBP13.83□□□□□ -0.2
NUP54-213ENST00000513352 GPATCH2Q9NW75 528 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 HPF1Q9NWY4 346 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 SLAMF8Q9P0V8 285 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 LHX6Q9UPM6 363 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 GPR55Q9Y2T6 319 aaPredicted RBP13.83□□□□□ -0.2
NUP54-213ENST00000513352 ZFHX4Q86UP3 3567 aa13.83□□□□□ -0.2
NUP54-213ENST00000513352 GXYLT2A0PJZ3 443 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 TTC36A6NLP5 189 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 CAPN14A8MX76 684 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 ERVH48-1M5A8F1 160 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 ACOX3O15254 700 aa13.82□□□□□ -0.2
NUP54-213ENST00000513352 REM1O75628 298 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms