RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 VWA7Q9Y334 891 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FAM166BA8MTA8 275 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 M0R1B8 84 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FZD7O75084 574 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FOXH1O75593 365 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PIGNO95427 931 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 EPOP01588 193 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LCATP04180 440 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 BCKDHAP12694 445 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SRCP12931 536 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 NDUFB7P17568 137 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 GGT5P36269 586 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 MAXP61244 160 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 RPS4XP62701 263 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 KLF1Q13351 362 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 GANABQ14697 944 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 PROSER1Q86XN7 944 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SMRP1Q8NCR6 262 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PROKR2Q8NFJ6 384 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR4X2Q8NGF9 303 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR8B3Q8NGG8 313 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 C1orf54Q8WWF1 131 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SCAMP4Q969E2 229 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 TPD52L3Q96J77 140 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 MYRFLQ96LU7 910 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CCDC74BQ96LY2 380 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR5B2Q96R09 309 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR8B2Q96RD0 313 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PKMYT1Q99640 499 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 COL25A1Q9BXS0 654 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 SYT4Q9H2B2 425 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 IFT46Q9NQC8 304 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 P4HTMQ9NXG6 502 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SLAMF8Q9P0V8 285 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 C17orf105B2RV13 164 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 GABRDO14764 452 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 XPNPEP2O43895 674 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PRLP01236 227 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 IGHDP01880 384 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SRD5A1P18405 259 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 TBPP20226 339 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LMO2P25791 158 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 IL1R2P27930 398 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PRSS12P56730 875 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 IRX1P78414 480 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 EIF2B1Q14232 305 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 SFT2D3Q587I9 215 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 KLHDC7AQ5VTJ3 777 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PRAMEF8Q5VWM4 474 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PRAMEF7Q5VXH5 474 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LRRC66Q68CR7 880 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 RPL13AP3Q6NVV1 102 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SLC16A14Q7RTX9 510 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 NR2C2APQ86WQ0 139 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CMIPQ8IY22 773 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ZZZ3Q8IYH5 903 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PIANPQ8IYJ0 282 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ENDOVQ8N8Q3 282 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 C19orf47Q8N9M1 422 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR2T6Q8NHC8 308 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ZNF689Q96CS4 500 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 ERVMER34-1Q9H9K5 563 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 RDH14Q9HBH5 336 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CPNE5Q9HCH3 593 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 TAS2R10Q9NYW0 307 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CNOT6Q9ULM6 557 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 USP32Q8NFA0 1604 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 HELTA6NFD8 242 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LILRA5A6NI73 299 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CLDN25C9JDP6 229 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ANHXE9PGG2 379 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 RNASEK-C17orf49H0YIS7 233 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 EIF3FO00303 357 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 SUV39H1O43463 412 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 IFNA21P01568 189 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ZNF182P17025 639 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 GCSHP23434 173 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 NPY1RP25929 384 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 TACR3P29371 465 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SNCAP37840 140 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LIMS1P48059 325 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 GSK3AP49840 483 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SUB1P53999 127 aaKnown RBP eCLIP3.87□□□□□ -1.79
USH2A-202ENST00000366942 EIF5AP63241 154 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 DEFB134Q4QY38 66 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 LAMTOR1Q6IAA8 161 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 ABRAXAS1Q6UWZ7 409 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PAMR1Q6UXH9 720 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 HACD2Q6Y1H2 254 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 FAM183BPQ6ZVS7 135 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PIWIL4Q7Z3Z4 852 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 TMEM25Q86YD3 366 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 C12orf56Q8IXR9 622 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 SHISA5Q8N114 240 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 PTGR2Q8N8N7 351 aaPredicted RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 PCNPQ8WW12 178 aaKnown RBP3.87□□□□□ -1.79
USH2A-202ENST00000366942 CHFRQ96EP1 664 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 CTRCQ99895 268 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR10A5Q9H207 317 aa3.87□□□□□ -1.79
USH2A-202ENST00000366942 OR10A2Q9H208 303 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms