RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SPATA22Q8NHS9 363 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PMM1Q92871 262 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 FGF13Q92913 245 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PIWIL1Q96J94 861 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 C19orf43Q9BQ61 176 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 STRA6Q9BX79 667 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 SLC22A11Q9NSA0 550 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MBD1Q9UIS9 605 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ENPP5Q9UJA9 477 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ACSL6Q9UKU0 697 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 AHSA1O95433 338 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 GJA1P17302 382 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TRIP6Q15654 476 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 C6orf141Q5SZD1 244 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ABHD12BQ7Z5M8 362 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 ASPGQ86U10 573 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM173Q86WV6 379 aaPredicted RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM151BQ8IW70 566 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 KLHDC8BQ8IXV7 354 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PAPD5Q8NDF8 572 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.46□□□□□ -1.222e-6■■■■■ 35.6
VPS13D-211ENST00000543710 SNAPC3Q92966 411 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TCEAL3Q969E4 200 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 MAELQ96JY0 434 aaKnown RBP7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TAS2R10Q9NYW0 307 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 NUP50Q9UKX7 468 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 CLEC4AQ9UMR7 237 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 SLC7A11Q9UPY5 501 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 DHDHQ9UQ10 334 aa7.46□□□□□ -1.22
VPS13D-211ENST00000543710 TRGV8A0A0C4DH27 118 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 CLDN24A6NM45 220 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 H7C417 338 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 AHSGP02765 367 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 IL1R2P27930 398 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 MICAQ29983 383 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 UBE2NLQ5JXB2 153 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM198Q66K66 360 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM205Q6UW68 189 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ERN2Q76MJ5 926 aaKnown RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF765Q7L2R6 523 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 OR4K14Q8NGD5 310 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 JPH3Q8WXH2 748 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 KCTD12Q96CX2 325 aaKnown RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 PDLIM5Q96HC4 596 aaKnown RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ATP13A2Q9NQ11 1180 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ASIC5Q9NY37 505 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM181Q9P2C4 612 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 PCDHA9Q9Y5H5 950 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 NOTOA8MTQ0 251 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM189-UBE2V1I3L0A0 370 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 KDM4BO94953 1096 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 PROX2Q3B8N5 592 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 OR4C11Q6IEV9 310 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 PAQR3Q6TCH7 311 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 GPR155Q7Z3F1 870 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 TMEM135Q86UB9 458 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF584Q8IVC4 421 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 UBE2J2Q8N2K1 259 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 FTMTQ8N4E7 242 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 PRR7Q8TB68 274 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ASB17Q8WXJ9 295 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ELSPBP1Q96BH3 223 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 PCED1AQ9H1Q7 454 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 TUBB1Q9H4B7 451 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 MTG2Q9H4K7 406 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 EPHX3Q9H6B9 360 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 TXNRD2Q9NNW7 524 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 OLAHQ9NV23 265 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 MYH1P12882 1939 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 IGKV6D-21A0A0A0MT36 114 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 A6NL46 340 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 SDHDO14521 159 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 GALR2O43603 387 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ATP6AP2O75787 350 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 CSTBP04080 98 aaKnown RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 S1PR1P21453 382 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 UFM1P61960 85 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 DEFB103AP81534 67 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 IL10RAQ13651 578 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 RBM39Q14498 530 aaKnown RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 RAB11BQ15907 218 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 OGFOD2Q6N063 350 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 NXPE4Q6UWF7 544 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 FAM198BQ6UWH4 519 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 DLK2Q6UY11 383 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 FAM83HQ6ZRV2 1179 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF598Q86UK7 904 aaKnown RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 LRRC25Q8N386 305 aaPredicted RBP7.45□□□□□ -1.22
VPS13D-211ENST00000543710 VWA5B2Q8N398 1253 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 ZNF615Q8N8J6 731 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 CANT1Q8WVQ1 401 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 EBF4Q9BQW3 602 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 NHSQ6T4R5 1651 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 RNF13O43567 381 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 GMFGO60234 142 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 UPK1BO75841 260 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 C1SP09871 688 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 OR4Q2P0C623 313 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 OSMP13725 252 aa7.45□□□□□ -1.22
VPS13D-211ENST00000543710 FOSL1P15407 271 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms