RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CXorf36Q9H7Y0 433 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 TAS2R9Q9NYW1 312 aa27.51■■□□□ 1.99
LIMCH1-211ENST00000509638 CCDC154A6NI56 674 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 A8MUI8 341 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 CCDC22O60826 627 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 IFI6P09912 130 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 SOAT1P35610 550 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 RNF4P78317 190 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 FCRLBQ6BAA4 426 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 MSANTD1Q6ZTZ1 278 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 C16orf52Q8NHV5 167 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 GAL3ST4Q96RP7 486 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 BTNL2Q9UIR0 455 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 PCDHGB4Q9UN71 923 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 CAPN7Q9Y6W3 813 aa27.5■■□□□ 1.99
LIMCH1-211ENST00000509638 OR6C76A6NM76 312 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 UPK1AO00322 258 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 CEACAM4O75871 244 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 ZFAND5O76080 213 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 KLF10Q13118 480 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 EBPQ15125 230 aaKnown RBP27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 VPS26BQ4G0F5 336 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 SLC29A4Q7RTT9 530 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 SLC5A8Q8N695 610 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 C19orf53Q9UNZ5 99 aaPredicted RBP27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 DTX4Q9Y2E6 619 aa27.49■■□□□ 1.99
LIMCH1-211ENST00000509638 ASPDHA6ND91 283 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 COQ9O75208 318 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 BCAS2O75934 225 aaPredicted RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 CPSF4O95639 269 aaKnown RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 LRRC74AQ0VAA2 488 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 MAPKAPK3Q16644 382 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 B3GNTL1Q67FW5 361 aaPredicted RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 DNAJC14Q6Y2X3 702 aaPredicted RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 OR8K3Q8NH51 312 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 FAM120BQ96EK7 910 aaKnown RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 PANX1Q96RD7 426 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 INPP5KQ9BT40 448 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 TRIM4Q9C037 500 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 WWTR1Q9GZV5 400 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 RMND5AQ9H871 391 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 SLC52A3Q9NQ40 469 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 SERHLQ9NQF3 203 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 ERVK-11Q9UQG0 969 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 NME6O75414 186 aaPredicted RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 PSMG1O95456 288 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 PRR5P85299 388 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 SPDYE7PQ495Y7 208 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 H3F3CQ6NXT2 135 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 OR5AK3PQ8NH89 298 aa27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 ZCCHC3Q9NUD5 404 aaKnown RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 HEMK1Q9Y5R4 338 aaPredicted RBP27.48■■□□□ 1.99
LIMCH1-211ENST00000509638 TNRC6AQ8NDV7 1962 aaKnown RBP27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 CACNA1BQ00975 2339 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 NDUFAB1O14561 156 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 EMDP50402 254 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 GAB1Q13480 694 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 CRB2Q5IJ48 1285 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 AGAP7PQ5VUJ5 663 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 TCTN3Q6NUS6 607 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 SLC2A7Q6PXP3 512 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 TMEM64Q6YI46 380 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 BCAS4Q8TDM0 211 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 AGAP4Q96P64 663 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 MS4A4EQ96PG1 132 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 NPAS2Q99743 824 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 SLC25A23Q9BV35 468 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 C3orf14Q9HBI5 128 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 PRODH2Q9UF12 536 aa27.47■■□□□ 1.99
LIMCH1-211ENST00000509638 SLC22A2O15244 555 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 EMC8O43402 210 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 ADSLP30566 484 aaPredicted RBP27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 SOX11P35716 441 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 CDKN2CP42773 168 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 ZNF155Q12901 538 aaPredicted RBP27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 C6orf10Q5SRN2 563 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 NUBPLQ8TB37 319 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 SFXN5Q8TD22 340 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 ITCHQ96J02 903 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 ITPAQ9BY32 194 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 MYLK2Q9H1R3 596 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 ZNF552Q9H707 407 aaPredicted RBP27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 LIN28AQ9H9Z2 209 aaKnown RBP27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 EQTNQ9NQ60 294 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 NTMQ9P121 344 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 CFL2Q9Y281 166 aa27.46■■□□□ 1.99
LIMCH1-211ENST00000509638 CNTRLQ7Z7A1 2325 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 RNF103-CHMP3A0A140T963 221 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 A0A1W2PP18 115 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 DYTNA2CJ06 578 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 TMEM200CA6NKL6 621 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 MKRN2OSH3BPM6 223 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 RFXANKO14593 260 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 MAN1A2O60476 641 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 SNRPB2P08579 225 aaKnown RBP27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 PRKAG1P54619 331 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 RHDQ02161 417 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 LINC00303Q3SY05 128 aa27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 C16orf47Q6ZP98 133 aaPredicted RBP27.45■■□□□ 1.99
LIMCH1-211ENST00000509638 CCDC197Q8NCU1 140 aa27.45■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms