RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 PLEKHG7Q6ZR37 379 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 OR5H2Q8NGV7 314 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 OAZ3Q9UMX2 235 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 LOC100130705A0A1B0GUX0 176 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 KLHL33A6NCF5 533 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 TOR1AO14656 332 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 DFNA5O60443 496 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 SCGB1D1O95968 90 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 PRKCGP05129 697 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 CHRM1P11229 460 aaPredicted RBP11.55□□□□□ -0.56
PCF11-201ENST00000298281 IL32P24001 234 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 STEAP4Q687X5 459 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 CLEC1AQ8NC01 280 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 OR13C4Q8NGS5 318 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 RBM14Q96PK6 669 aaKnown RBP11.55□□□□□ -0.56
PCF11-201ENST00000298281 RNF6Q9Y252 685 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 SLC45A1Q9Y2W3 748 aa11.55□□□□□ -0.56
PCF11-201ENST00000298281 A0A1W2PPV4 95 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 RPL17P18621 184 aaKnown RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 VSX2P58304 361 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 GABREP78334 506 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 TAF9Q16594 264 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 KCTD19Q17RG1 926 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 SOWAHAQ2M3V2 549 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 KIAA0907Q7Z7F0 614 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 OR9A2Q8NGT5 310 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 SCAMP5Q8TAC9 235 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 TMEM59Q9BXS4 323 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 PAK1IP1Q9NWT1 392 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 EXOSC1Q9Y3B2 195 aaKnown RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 VSTM2BA6NLU5 285 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 A8MT66 165 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 HOXD8P13378 290 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 ZNF43P17038 809 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 THBS3P49746 956 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 PRKXP51817 358 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 FBXL22Q6P050 247 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 ZDHHC14Q8IZN3 488 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 MARVELD2Q8N4S9 558 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 OR9A1PQ8NGU1 263 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 SPTSSAQ969W0 71 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 CXXC1Q9P0U4 656 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 TAC3Q9UHF0 121 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 KLF11O14901 512 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 RBBP9O75884 186 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 CRYBA1P05813 215 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 XRCC1P18887 633 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 FRKP42685 505 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 LGALS4P56470 323 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 ZNF92Q03936 586 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 KLF1Q13351 362 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 REEP3Q6NUK4 255 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 KCTD18Q6PI47 426 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 SLC36A4Q6YBV0 504 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 NPAS3Q8IXF0 933 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 BEST3Q8N1M1 668 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 FAM156AQ8NDB6 213 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 EBF3Q9H4W6 596 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 GOLT1BQ9Y3E0 138 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 PCDHAC2Q9Y5I4 1007 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 COL3A1P02461 1466 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 SOWAHBA6NEL2 793 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 SEC14L2O76054 403 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 HOXC8P31273 242 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 SHMT2P34897 504 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 SF3B4Q15427 424 aaKnown RBP eCLIP11.54□□□□□ -0.56
PCF11-201ENST00000298281 MRPL21Q7Z2W9 205 aaKnown RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 DCAF4L2Q8NA75 395 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 CLEC4DQ8WXI8 215 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 SYT3Q9BQG1 590 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 G6PC3Q9BUM1 346 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 ZNF223Q9UK11 482 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 PUS1Q9Y606 427 aaKnown RBP eCLIP11.54□□□□□ -0.56
PCF11-201ENST00000298281 TRAF3IP2O43734 574 aaPredicted RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 GPR37L1O60883 481 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 CD9P21926 228 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 HMGCS1Q01581 520 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 EMX2Q04743 252 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 GRM2Q14416 872 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 C6orf132Q5T0Z8 1188 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 ZNF783Q6ZMS7 281 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 ZDHHC1Q8WTX9 485 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 PYCR2Q96C36 320 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 NXF5Q9H1B4 397 aaKnown RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 POPDC3Q9HBV1 291 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 ACTL7AQ9Y615 435 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 M0R233 179 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 UGT1A9O60656 530 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 UGT1A6P19224 532 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 TSTQ16762 297 aaKnown RBP11.54□□□□□ -0.56
PCF11-201ENST00000298281 PLEKHS1Q5SXH7 462 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 DTX3Q8N9I9 347 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 OR51T1Q8NGJ9 327 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 NFKBIDQ8NI38 313 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 C10orf82Q8WW14 230 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 KIAA1191Q96A73 305 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 TMEM80Q96HE8 168 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 UGT1A7Q9HAW7 530 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 UGT1A10Q9HAW8 530 aa11.54□□□□□ -0.56
PCF11-201ENST00000298281 UGT1A8Q9HAW9 530 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms