RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 SOHLH2Q9NX45 425 aa21.28■■□□□ 1
CDX1-201ENST00000231656 NDUFAF4Q9P032 175 aa21.28■■□□□ 1
CDX1-201ENST00000231656 SAMHD1Q9Y3Z3 626 aaKnown RBP21.28■■□□□ 1
CDX1-201ENST00000231656 MUC6Q6W4X9 2439 aa21.28■■□□□ 1
CDX1-201ENST00000231656 A0A1W2PQM1 296 aa21.28■■□□□ 1
CDX1-201ENST00000231656 FLRT2O43155 660 aa21.28■■□□□ 1
CDX1-201ENST00000231656 IFNA14P01570 189 aa21.28■■□□□ 1
CDX1-201ENST00000231656 ZNF888P0CJ79 500 aaPredicted RBP21.28■■□□□ 1
CDX1-201ENST00000231656 SMIM10L1P0DMW3 83 aa21.28■■□□□ 1
CDX1-201ENST00000231656 MLLT3P42568 568 aaPredicted RBP21.28■■□□□ 1
CDX1-201ENST00000231656 NCBP2P52298 156 aaKnown RBP eCLIP21.28■■□□□ 1
CDX1-201ENST00000231656 ARHGDIAP52565 204 aa21.28■■□□□ 1
CDX1-201ENST00000231656 CDH15P55291 814 aa21.28■■□□□ 1
CDX1-201ENST00000231656 SNRPNP63162 240 aaKnown RBP21.28■■□□□ 1
CDX1-201ENST00000231656 BTN3A2P78410 334 aa21.28■■□□□ 1
CDX1-201ENST00000231656 CCL7P80098 99 aa21.28■■□□□ 1
CDX1-201ENST00000231656 SNAP47Q5SQN1 464 aa21.28■■□□□ 1
CDX1-201ENST00000231656 MCATQ8IVS2 390 aaKnown RBP21.28■■□□□ 1
CDX1-201ENST00000231656 SPPL2AQ8TCT8 520 aa21.28■■□□□ 1
CDX1-201ENST00000231656 SLC38A5Q8WUX1 472 aa21.28■■□□□ 1
CDX1-201ENST00000231656 LZICQ8WZA0 190 aa21.28■■□□□ 1
CDX1-201ENST00000231656 CNRIP1Q96F85 164 aaPredicted RBP21.28■■□□□ 1
CDX1-201ENST00000231656 SMIM10Q96HG1 83 aa21.28■■□□□ 1
CDX1-201ENST00000231656 BBS4Q96RK4 519 aa21.28■■□□□ 1
CDX1-201ENST00000231656 EPYCQ99645 322 aa21.28■■□□□ 1
CDX1-201ENST00000231656 MAPKAP1Q9BPZ7 522 aa21.28■■□□□ 1
CDX1-201ENST00000231656 PDE7BQ9NP56 450 aa21.28■■□□□ 1
CDX1-201ENST00000231656 RXFP3Q9NSD7 469 aa21.28■■□□□ 1
CDX1-201ENST00000231656 SEMA5BQ9P283 1151 aa21.28■■□□□ 1
CDX1-201ENST00000231656 PRAMEF25A6NGN4 478 aa21.27■■□□□ 1
CDX1-201ENST00000231656 OR6B1O95007 311 aa21.27■■□□□ 1
CDX1-201ENST00000231656 RPLP0P05388 317 aaKnown RBP21.27■■□□□ 1
CDX1-201ENST00000231656 TFPTP0C1Z6 253 aa21.27■■□□□ 1
CDX1-201ENST00000231656 TNFRSF1BP20333 461 aa21.27■■□□□ 1
CDX1-201ENST00000231656 DAPP51397 102 aa21.27■■□□□ 1
CDX1-201ENST00000231656 RAD23AP54725 363 aa21.27■■□□□ 1
CDX1-201ENST00000231656 DUSP2Q05923 314 aa21.27■■□□□ 1
CDX1-201ENST00000231656 MAPK11Q15759 364 aa21.27■■□□□ 1
CDX1-201ENST00000231656 KDM4DQ6B0I6 523 aa21.27■■□□□ 1
CDX1-201ENST00000231656 TMEM71Q6P5X7 295 aa21.27■■□□□ 1
CDX1-201ENST00000231656 TMPRSS9Q7Z410 1059 aa21.27■■□□□ 1
CDX1-201ENST00000231656 ZNF655Q8N720 491 aaPredicted RBP21.27■■□□□ 1
CDX1-201ENST00000231656 ZNF555Q8NEP9 628 aa21.27■■□□□ 1
CDX1-201ENST00000231656 SUN3Q8TAQ9 357 aa21.27■■□□□ 1
CDX1-201ENST00000231656 RHBDD1Q8TEB9 315 aa21.27■■□□□ 1
CDX1-201ENST00000231656 YTHDF1Q9BYJ9 559 aaKnown RBP21.27■■□□□ 1
CDX1-201ENST00000231656 LRRN3Q9H3W5 708 aa21.27■■□□□ 1
CDX1-201ENST00000231656 THSD1Q9NS62 852 aa21.27■■□□□ 1
CDX1-201ENST00000231656 THUMPD1Q9NXG2 353 aaKnown RBP21.27■■□□□ 1
CDX1-201ENST00000231656 TUBA8Q9NY65 449 aaPredicted RBP21.27■■□□□ 1
CDX1-201ENST00000231656 ATXN7L1Q9ULK2 861 aaPredicted RBP21.27■■□□□ 1
CDX1-201ENST00000231656 COL5A1P20908 1838 aaPredicted RBP21.26■□□□□ 0.99
CDX1-201ENST00000231656 HMGN4O00479 90 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 ZSCAN9O15535 394 aaPredicted RBP21.26■□□□□ 0.99
CDX1-201ENST00000231656 CPNE6O95741 557 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 ITGAMP11215 1152 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 IGFBP5P24593 272 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 GABRA4P48169 554 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 ALDH3B2P48448 385 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 TP53BP2Q13625 1128 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 MANEAQ5SRI9 462 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 TMEM64Q6YI46 380 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 PRSS42Q7Z5A4 293 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 CSNK1A1LQ8N752 337 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 ATOH1Q92858 354 aaPredicted RBP21.26■□□□□ 0.99
CDX1-201ENST00000231656 RAB8BQ92930 207 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 SEMA4GQ9NTN9 838 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 PDP1Q9P0J1 537 aaPredicted RBP21.26■□□□□ 0.99
CDX1-201ENST00000231656 ORC6Q9Y5N6 252 aa21.26■□□□□ 0.99
CDX1-201ENST00000231656 URADA6NGE7 173 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 SLC16A6O15403 523 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 SRPX2O60687 465 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 MITFO75030 526 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 ERAL1O75616 437 aaKnown RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 BMP10O95393 424 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 LDOC1O95751 146 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 BCHEP06276 602 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 CTSBP07858 339 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 GPC1P35052 558 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 SEPHS1P49903 392 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 CEBPEQ15744 281 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 ZNF750Q32MQ0 723 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 ZNF574Q6ZN55 896 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 THAP5Q7Z6K1 395 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 ARMC8Q8IUR7 673 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 C8orf59Q8N0T1 100 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 SFXN5Q8TD22 340 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 TMEM19Q96HH6 336 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 CNDP2Q96KP4 475 aaKnown RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 SLC35G5Q96KT7 338 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 EDEM2Q9BV94 578 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 STARD5Q9NSY2 213 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 A0A087WXM4 84 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 A8MU76 341 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 RRM2P31350 389 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 HSD11B2P80365 405 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 EP300Q09472 2414 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 CNPY1Q3B7I2 92 aa21.25■□□□□ 0.99
CDX1-201ENST00000231656 RPS26P11Q5JNZ5 115 aaPredicted RBP21.25■□□□□ 0.99
CDX1-201ENST00000231656 FAHD1Q6P587 224 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms