RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MYO9BQ13459 2157 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 MUC6Q6W4X9 2439 aa2.56□□□□□ -2
SCFD1-219ENST00000556413 GSTTP1A0A1W2PQM5 241 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 E9PAM4 449 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 K7ENM7 598 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 IFIT3O14879 490 aaKnown RBP2.55□□□□□ -2
SCFD1-219ENST00000556413 ZBTB5O15062 677 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 CHMP2AO43633 222 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 IGHDP01880 384 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 OR52Z1P0C646 297 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 EPCAMP16422 314 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 IL11P20809 199 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 ELK3P41970 407 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 PPIAP62937 165 aaKnown RBP2.55□□□□□ -2
SCFD1-219ENST00000556413 MRPS6P82932 125 aaKnown RBP2.55□□□□□ -2
SCFD1-219ENST00000556413 ACSM1Q08AH1 577 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 RASGEF1BQ0VAM2 473 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 RALGDSQ12967 914 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 CUL3Q13618 768 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 PTPRCAPQ14761 206 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 UPP1Q16831 310 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 ATG2AQ2TAZ0 1938 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 HERC4Q5GLZ8 1057 aaPredicted RBP2.55□□□□□ -2
SCFD1-219ENST00000556413 MARCH8Q5T0T0 291 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 UTF1Q5T230 341 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 TTC41PQ6P2S7 1318 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 C16orf54Q6UWD8 224 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 IGFL3Q6UXB1 125 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 HSCBQ8IWL3 235 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 TCEANCQ8N8B7 351 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 COLGALT1Q8NBJ5 622 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 EXOC6Q8TAG9 804 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 ATL1Q8WXF7 558 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 ESR2Q92731 530 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 RADILQ96JH8 1075 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 NUDT16L1Q9BRJ7 211 aaKnown RBP2.55□□□□□ -2
SCFD1-219ENST00000556413 CDH20Q9HBT6 801 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 HACD3Q9P035 362 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 WDR35Q9P2L0 1181 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 CPSF3Q9UKF6 684 aaKnown RBP2.55□□□□□ -2
SCFD1-219ENST00000556413 MRPL11Q9Y3B7 192 aaKnown RBP2.55□□□□□ -2
SCFD1-219ENST00000556413 VPS13AQ96RL7 3174 aa2.55□□□□□ -2
SCFD1-219ENST00000556413 MYH7P12883 1935 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 SIP14410 1827 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 TRIOO75962 3097 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 IGHV3-16A0A0C4DH30 117 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 TRBC2A0A5B9 178 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 MTMR11A4FU01 709 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 RPL37AP8A6NKH3 93 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 LOC730098B7Z3J9 87 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 AP5Z1O43299 807 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 FIBPO43427 364 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 ATP6AP2O75787 350 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 CCNE2O96020 404 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 GSRP00390 522 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 SCG2P13521 617 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 PKLRP30613 574 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 PCGF2P35227 344 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 GSK3BP49841 420 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 ASCL1P50553 236 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 PPP5CP53041 499 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 UBASH3AP57075 661 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 SRPXP78539 464 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 ACY1Q03154 408 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 ITGB3BPQ13352 177 aaPredicted RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 ALX1Q15699 326 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 NPTX1Q15818 432 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 UGCGQ16739 394 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 CLLU1OSQ5K130 101 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 ERMARDQ5T6L9 678 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 TMED8Q6PL24 325 aaPredicted RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 RBPMS2Q6ZRY4 209 aaKnown RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 PRPF39Q86UA1 669 aaKnown RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 IQCHQ86VS3 1027 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 FAM228AQ86W67 206 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 METTL13Q8N6R0 699 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 NOA1Q8NC60 698 aaKnown RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 RMDN1Q96DB5 314 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 HNRNPABQ99729 332 aaKnown RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 APOL2Q9BQE5 337 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 PI4K2AQ9BTU6 479 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 RBM24Q9BX46 236 aaKnown RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 MFSD1Q9H3U5 465 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 CWH43Q9H720 699 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 NAP1L2Q9ULW6 460 aaPredicted RBP2.54□□□□□ -2
SCFD1-219ENST00000556413 GON4LQ3T8J9 2241 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 DCHS1Q96JQ0 3298 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 TECTAO75443 2155 aa2.54□□□□□ -2
SCFD1-219ENST00000556413 BRWD1Q9NSI6 2320 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 MYO7AQ13402 2215 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 DNAH14Q0VDD8 3507 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 BDP1A6H8Y1 2624 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 URADA6NGE7 173 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 E7EWF7 191 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 C5orf67F2Z3F1 127 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 F8VVB4 439 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 F8VWA3 439 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 TXNL1O43396 289 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 CYTIPO60759 359 aa2.53□□□□□ -2
SCFD1-219ENST00000556413 DIAPH2O60879 1101 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms