RNA–Protein interactions for RNA: YJR028W

YJR028W, Transcript of Retrotransposon TYA Gag gene co-transcribed with TYB Pol, yeast

Gene YJR028W, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YJR028W	YJR028W	ARI1	P53111	347 aa	Known RBP	5.76	□□□□□ -1.49
YJR028W	YJR028W	SDA1	P53313	767 aa	Known RBP	5.76	□□□□□ -1.49
YJR028W	YJR028W	YNR014W	P53719	212 aa		5.76	□□□□□ -1.49
YJR028W	YJR028W	ACE2	P21192	770 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	RRT14	P40470	206 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	GPP1	P41277	250 aa	Known RBP	5.75	□□□□□ -1.49
YJR028W	YJR028W	PEX8	P53248	589 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	DAM1	P53267	343 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	RSC3	Q06639	885 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	YOL057W	Q08225	711 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	MET7	Q08645	548 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	NUP145	P49687	1317 aa		5.75	□□□□□ -1.49
YJR028W	YJR028W	RAD18	P10862	487 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	CDC48	P25694	835 aa	Known RBP	5.74	□□□□□ -1.49
YJR028W	YJR028W	FUN30	P31380	1131 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	STO1	P34160	861 aa	Known RBP	5.74	□□□□□ -1.49
YJR028W	YJR028W	MCD4	P36051	919 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	TYS1	P36421	394 aa	Known RBP	5.74	□□□□□ -1.49
YJR028W	YJR028W	YHL012W	P38709	493 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	NOP2	P40991	618 aa	Known RBP	5.74	□□□□□ -1.49
YJR028W	YJR028W	YJR120W	P47157	116 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	HFM1	P51979	1187 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	ALO1	P54783	526 aa	Known RBP	5.74	□□□□□ -1.49
YJR028W	YJR028W	MTC5	Q03897	1148 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	SFL1	P20134	766 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	MDL2	P33311	773 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	PCM1	P38628	557 aa	Known RBP	5.74	□□□□□ -1.49
YJR028W	YJR028W	TPM2	P40414	161 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	HXT16	P47185	567 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	SFB2	P53953	876 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	MTQ2	Q03920	221 aa	Predicted RBP	5.74	□□□□□ -1.49
YJR028W	YJR028W	COG8	Q04632	607 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	RSC58	Q07979	502 aa		5.74	□□□□□ -1.49
YJR028W	YJR028W	WHI3	P34761	661 aa	Known RBP	5.73	□□□□□ -1.49
YJR028W	YJR028W	CCZ1	P38273	704 aa		5.73	□□□□□ -1.49
YJR028W	YJR028W	NUG1	P40010	520 aa	Known RBP	5.73	□□□□□ -1.49
YJR028W	YJR028W	PRY1	P47032	299 aa		5.73	□□□□□ -1.49
YJR028W	YJR028W	COG6	P53959	839 aa		5.73	□□□□□ -1.49
YJR028W	YJR028W	SNP1	Q00916	300 aa	Predicted RBP	5.73	□□□□□ -1.49
YJR028W	YJR028W	TDA6	Q06466	467 aa		5.73	□□□□□ -1.49
YJR028W	YJR028W	MPH2	P0CD99	609 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	TRK2	P28584	889 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	NAM7	P30771	971 aa	Known RBP	5.72	□□□□□ -1.49
YJR028W	YJR028W	EUG1	P32474	517 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	GRX7	P38068	203 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	YBR071W	P38243	211 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	PEX7	P39108	375 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	MMM1	P41800	426 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	YJR096W	P47137	282 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	ATG33	Q06485	197 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	FAP7	Q12055	197 aa	Predicted RBP	5.72	□□□□□ -1.49
YJR028W	YJR028W	YDR215C	Q12240	137 aa		5.72	□□□□□ -1.49
YJR028W	YJR028W	YCK2	P23292	546 aa	Known RBP	5.71	□□□□□ -1.5
YJR028W	YJR028W	RPC82	P32349	654 aa		5.71	□□□□□ -1.5
YJR028W	YJR028W	ABZ1	P37254	787 aa	Predicted RBP	5.71	□□□□□ -1.5
YJR028W	YJR028W	OYE3	P41816	400 aa	Predicted RBP	5.71	□□□□□ -1.5
YJR028W	YJR028W	YDR514C	Q04408	483 aa		5.71	□□□□□ -1.5
YJR028W	YJR028W	HFD1	Q04458	532 aa		5.71	□□□□□ -1.5
YJR028W	YJR028W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	5.71	□□□□□ -1.5	not detected
YJR028W	YJR028W	XYL2	Q07993	356 aa		5.71	□□□□□ -1.5
YJR028W	YJR028W	HMG1	P12683	1054 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	MIH1	P23748	554 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	PER1	P25625	357 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	HOG1	P32485	435 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	PGM1	P33401	570 aa	Known RBP	5.7	□□□□□ -1.5
YJR028W	YJR028W	YAP1801	P38856	637 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	CIT3	P43635	486 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	NIT3	P49954	291 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	SDH1	Q00711	640 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	REH1	Q06709	432 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	YOR059C	Q08448	450 aa	Known RBP	5.7	□□□□□ -1.5
YJR028W	YJR028W	THI72	Q08579	599 aa		5.7	□□□□□ -1.5
YJR028W	YJR028W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	5.69	□□□□□ -1.5	not detected
YJR028W	YJR028W	ECM21	P38167	1117 aa	Known RBP	5.69	□□□□□ -1.5
YJR028W	YJR028W	CKB2	P38930	258 aa		5.69	□□□□□ -1.5
YJR028W	YJR028W	AKR1	P39010	764 aa		5.69	□□□□□ -1.5
YJR028W	YJR028W	SLN1	P39928	1220 aa	Predicted RBP	5.69	□□□□□ -1.5
YJR028W	YJR028W	RCM1	P53972	490 aa		5.69	□□□□□ -1.5
YJR028W	YJR028W	SVS1	Q12254	260 aa		5.69	□□□□□ -1.5
YJR028W	YJR028W	TAD1	P53065	400 aa		5.68	□□□□□ -1.5
YJR028W	YJR028W	AIM14	P53109	570 aa		5.68	□□□□□ -1.5
YJR028W	YJR028W	NOG2	P53742	486 aa	Known RBP	5.68	□□□□□ -1.5
YJR028W	YJR028W	HDA1	P53973	706 aa		5.68	□□□□□ -1.5
YJR028W	YJR028W	TGL2	P54857	326 aa		5.68	□□□□□ -1.5
YJR028W	YJR028W	GUD1	Q07729	489 aa		5.68	□□□□□ -1.5
YJR028W	YJR028W	OSW2	Q12202	724 aa		5.68	□□□□□ -1.5
YJR028W	YJR028W	GIN4	Q12263	1142 aa		5.68	□□□□□ -1.5
YJR028W	YJR028W	DAL7	P21826	554 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	SEC6	P32844	805 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	SAF1	P38352	637 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	NIT1	P40447	199 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	5.67	□□□□□ -1.5	not detected
YJR028W	YJR028W	LRS4	Q04087	347 aa	Known RBP	5.67	□□□□□ -1.5
YJR028W	YJR028W	YDR338C	Q05497	695 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	RSB1	Q08417	382 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	YOR378W	Q08902	515 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	TRE1	Q08919	783 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	GUP2	Q08929	609 aa		5.67	□□□□□ -1.5
YJR028W	YJR028W	RIB2	Q12362	591 aa	Known RBP	5.67	□□□□□ -1.5
YJR028W	YJR028W	YCL002C	P25565	263 aa		5.66	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms