RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ETNK1Q9HBU6 452 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 USP21Q9UK80 565 aa2.1□□□□□ -2.07
VPS35-212ENST00000640313 MED26O95402 600 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 FSTP19883 344 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 ADH7P40394 386 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 USP4Q13107 963 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 NR1H3Q13133 447 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 NBPF1Q3BBV0 1214 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 SH3D19Q5HYK7 790 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 LCE4AQ5TA78 99 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 FMR1NBQ8N0W7 255 aaPredicted RBP2.09□□□□□ -2.07
VPS35-212ENST00000640313 CCDC85AQ96PX6 553 aaPredicted RBP2.09□□□□□ -2.07
VPS35-212ENST00000640313 CDCA7Q9BWT1 371 aaPredicted RBP2.09□□□□□ -2.07
VPS35-212ENST00000640313 ZNF330Q9Y3S2 320 aaPredicted RBP2.09□□□□□ -2.07
VPS35-212ENST00000640313 GJA3Q9Y6H8 435 aa2.09□□□□□ -2.07
VPS35-212ENST00000640313 CDK2AP1O14519 115 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 INHAP05111 366 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 NOS3P29474 1203 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 SMTNP53814 917 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 NEUROD1Q13562 356 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 FBXO11Q86XK2 927 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 DZIP1LQ8IYY4 767 aaKnown RBP2.08□□□□□ -2.08
VPS35-212ENST00000640313 DTWD1Q8N5C7 304 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 SLC30A3Q99726 388 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 CEP126Q9P2H0 1117 aa2.08□□□□□ -2.08
VPS35-212ENST00000640313 GSC2O15499 205 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 STAU1O95793 577 aaKnown RBP2.07□□□□□ -2.08
VPS35-212ENST00000640313 SPINK2P20155 84 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 RFC5P40937 340 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 IREB2P48200 963 aaKnown RBP2.07□□□□□ -2.08
VPS35-212ENST00000640313 SCNN1DP51172 638 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 AFF1P51825 1210 aaKnown RBP2.07□□□□□ -2.08
VPS35-212ENST00000640313 KCNQ4P56696 695 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 SPEM2Q0P670 501 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 SFSWAPQ12872 951 aaKnown RBP2.07□□□□□ -2.08
VPS35-212ENST00000640313 MTFR1Q15390 333 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 IGF2-ASQ6U949 168 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 POU5F2Q8N7G0 328 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 C7orf43Q8WVR3 580 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 MEGF10Q96KG7 1140 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 GJD4Q96KN9 370 aaPredicted RBP2.07□□□□□ -2.08
VPS35-212ENST00000640313 SLC4A9Q96Q91 983 aa2.07□□□□□ -2.08
VPS35-212ENST00000640313 IQSEC3Q9UPP2 1182 aaPredicted RBP2.07□□□□□ -2.08
VPS35-212ENST00000640313 GPC6Q9Y625 555 aaPredicted RBP2.07□□□□□ -2.08
VPS35-212ENST00000640313 ADAMTS4O75173 837 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 C8AP07357 584 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 TSGA10IPQ3SY00 556 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 TMEM259Q4ZIN3 620 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 FBLN7Q53RD9 439 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 KRTAP5-3Q6L8H2 238 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 OGFOD2Q6N063 350 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 INTS5Q6P9B9 1019 aaKnown RBP2.06□□□□□ -2.08
VPS35-212ENST00000640313 BICDL1Q6ZP65 573 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 DMRTC2Q8IXT2 367 aaPredicted RBP2.06□□□□□ -2.08
VPS35-212ENST00000640313 TMEM130Q8N3G9 435 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 PHTF2Q8N3S3 785 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 CCER1Q8TC90 406 aaPredicted RBP2.06□□□□□ -2.08
VPS35-212ENST00000640313 SIRT1Q96EB6 747 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 EFCC1Q9HA90 598 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 JPH1Q9HDC5 661 aaPredicted RBP2.06□□□□□ -2.08
VPS35-212ENST00000640313 ADGRE2Q9UHX3 823 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 CHIC2Q9UKJ5 165 aa2.06□□□□□ -2.08
VPS35-212ENST00000640313 A6NJY4 79 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 EML1O00423 815 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 PTCD1O75127 700 aaKnown RBP2.05□□□□□ -2.08
VPS35-212ENST00000640313 WNT11O96014 354 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 IGLV1-40P01703 118 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 TXLNAP40222 546 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 GDF10P55107 478 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 LCE5AQ5TCM9 118 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 MSL1Q68DK7 614 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 LRRC69Q6ZNQ3 347 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 DTX1Q86Y01 620 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 CABP1Q9NZU7 370 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 SLC6A14Q9UN76 642 aa2.05□□□□□ -2.08
VPS35-212ENST00000640313 SOCS7O14512 581 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 RGS9O75916 674 aaPredicted RBP2.04□□□□□ -2.08
VPS35-212ENST00000640313 TGFB1P01137 390 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 GRIK1P39086 918 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 TEAD4Q15561 434 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 PSAPL1Q6NUJ1 521 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 ZDHHC13Q8IUH4 622 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 VSIG10Q8N0Z9 540 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 NUDT8Q8WV74 236 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 AKTIPQ9H8T0 292 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 NEUROD4Q9HD90 331 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 DOLKQ9UPQ8 538 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 KCNH4Q9UQ05 1017 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 RAXQ9Y2V3 346 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 USP3Q9Y6I4 520 aa2.04□□□□□ -2.08
VPS35-212ENST00000640313 KRTAP9-7A8MTY7 169 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 TMEM229AB2RXF0 380 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 DLL1O00548 723 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 GPR37L1O60883 481 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 NOS2P35228 1153 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 HAP1P54257 671 aaPredicted RBP2.03□□□□□ -2.08
VPS35-212ENST00000640313 GRIK5Q16478 980 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 Q6ZS46 218 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 RAB44Q7Z6P3 723 aaPredicted RBP2.03□□□□□ -2.08
VPS35-212ENST00000640313 ZDHHC1Q8WTX9 485 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms