RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 KIF6Q6ZMV9 814 aa16.96■□□□□ 0.31
GTF3A-209ENST00000640289 G2E3Q7L622 706 aa16.96■□□□□ 0.31
GTF3A-209ENST00000640289 SGIP1Q9BQI5 828 aa16.96■□□□□ 0.31
GTF3A-209ENST00000640289 SPON1Q9HCB6 807 aa16.96■□□□□ 0.31
GTF3A-209ENST00000640289 MAP3K15Q6ZN16 1313 aa16.96■□□□□ 0.3
GTF3A-209ENST00000640289 NLGN1Q8N2Q7 840 aa16.95■□□□□ 0.3
GTF3A-209ENST00000640289 TBC1D9BQ66K14 1250 aa16.94■□□□□ 0.3
GTF3A-209ENST00000640289 BICDL1Q6ZP65 573 aa16.94■□□□□ 0.3
GTF3A-209ENST00000640289 BCL2L13Q9BXK5 485 aa16.94■□□□□ 0.3
GTF3A-209ENST00000640289 SCN7AQ01118 1682 aa16.94■□□□□ 0.3
GTF3A-209ENST00000640289 ERVV-1B6SEH8 477 aa16.93■□□□□ 0.3
GTF3A-209ENST00000640289 MMP10P09238 476 aa16.93■□□□□ 0.3
GTF3A-209ENST00000640289 NFIXQ14938 502 aa16.93■□□□□ 0.3
GTF3A-209ENST00000640289 SSH1Q8WYL5 1049 aa16.93■□□□□ 0.3
GTF3A-209ENST00000640289 CT47B1P0C2W7 299 aaPredicted RBP16.92■□□□□ 0.3
GTF3A-209ENST00000640289 POLD1P28340 1107 aa16.92■□□□□ 0.3
GTF3A-209ENST00000640289 TM4SF1P30408 202 aa16.92■□□□□ 0.3
GTF3A-209ENST00000640289 DDR1Q08345 913 aa16.92■□□□□ 0.3
GTF3A-209ENST00000640289 CLEC4GQ6UXB4 293 aa16.92■□□□□ 0.3
GTF3A-209ENST00000640289 GIGYF2Q6Y7W6 1299 aaKnown RBP16.92■□□□□ 0.3
GTF3A-209ENST00000640289 ANKRD13DQ6ZTN6 518 aa16.92■□□□□ 0.3
GTF3A-209ENST00000640289 MRPL50Q8N5N7 158 aaKnown RBP16.92■□□□□ 0.3
GTF3A-209ENST00000640289 BCORQ6W2J9 1755 aa16.92■□□□□ 0.3
GTF3A-209ENST00000640289 FLIIQ13045 1269 aa16.91■□□□□ 0.3
GTF3A-209ENST00000640289 ZNF652Q9Y2D9 606 aa16.91■□□□□ 0.3
GTF3A-209ENST00000640289 POLRMTO00411 1230 aaKnown RBP16.9■□□□□ 0.3
GTF3A-209ENST00000640289 RARSP54136 660 aaKnown RBP16.9■□□□□ 0.3
GTF3A-209ENST00000640289 ALDH1L2Q3SY69 923 aa16.9■□□□□ 0.3
GTF3A-209ENST00000640289 PLBD2Q8NHP8 589 aa16.9■□□□□ 0.3
GTF3A-209ENST00000640289 ZNF428Q96B54 188 aa16.9■□□□□ 0.3
GTF3A-209ENST00000640289 GPTP24298 496 aa16.89■□□□□ 0.29
GTF3A-209ENST00000640289 RIC3Q7Z5B4 369 aa16.89■□□□□ 0.29
GTF3A-209ENST00000640289 SMC4Q9NTJ3 1288 aa16.89■□□□□ 0.29
GTF3A-209ENST00000640289 NIP7Q9Y221 180 aaKnown RBP eCLIP16.89■□□□□ 0.29
GTF3A-209ENST00000640289 PARP3Q9Y6F1 533 aa16.89■□□□□ 0.29
GTF3A-209ENST00000640289 COL24A1Q17RW2 1714 aa16.89■□□□□ 0.29
GTF3A-209ENST00000640289 ADCY9O60503 1353 aa16.89■□□□□ 0.29
GTF3A-209ENST00000640289 PI4KAP2A4QPH2 592 aa16.88■□□□□ 0.29
GTF3A-209ENST00000640289 RGL2O15211 777 aa16.88■□□□□ 0.29
GTF3A-209ENST00000640289 DDX58O95786 925 aaKnown RBP16.88■□□□□ 0.29
GTF3A-209ENST00000640289 FKBP5Q13451 457 aaPredicted RBP16.88■□□□□ 0.29
GTF3A-209ENST00000640289 KSR2Q6VAB6 950 aa16.88■□□□□ 0.29
GTF3A-209ENST00000640289 PI4KAP1Q8N8J0 262 aa16.88■□□□□ 0.29
GTF3A-209ENST00000640289 MAP3K2Q9Y2U5 619 aa16.88■□□□□ 0.29
GTF3A-209ENST00000640289 UBN2Q6ZU65 1347 aa16.88■□□□□ 0.29
GTF3A-209ENST00000640289 ATP10DQ9P241 1426 aa16.87■□□□□ 0.29
GTF3A-209ENST00000640289 FAM177BA6PVY3 158 aa16.87■□□□□ 0.29
GTF3A-209ENST00000640289 SERPINB2P05120 415 aa16.87■□□□□ 0.29
GTF3A-209ENST00000640289 TCIRG1Q13488 830 aa16.87■□□□□ 0.29
GTF3A-209ENST00000640289 ZNF34Q8IZ26 560 aa16.87■□□□□ 0.29
GTF3A-209ENST00000640289 SETDB2Q96T68 719 aa16.87■□□□□ 0.29
GTF3A-209ENST00000640289 LRP5O75197 1615 aa16.86■□□□□ 0.29
GTF3A-209ENST00000640289 BCAR3O75815 825 aa16.86■□□□□ 0.29
GTF3A-209ENST00000640289 MYD88Q99836 296 aa16.86■□□□□ 0.29
GTF3A-209ENST00000640289 PPP1R1BQ9UD71 204 aaPredicted RBP16.86■□□□□ 0.29
GTF3A-209ENST00000640289 CARMIL3Q8ND23 1372 aa16.86■□□□□ 0.29
GTF3A-209ENST00000640289 F6X3S4 739 aa16.85■□□□□ 0.29
GTF3A-209ENST00000640289 ATP5J2-PTCD1G3V325 749 aa16.85■□□□□ 0.29
GTF3A-209ENST00000640289 HSP90AB3PQ58FF7 597 aa16.85■□□□□ 0.29
GTF3A-209ENST00000640289 KLHL34Q8N239 644 aa16.85■□□□□ 0.29
GTF3A-209ENST00000640289 CCDC24Q8N4L8 307 aa16.85■□□□□ 0.29
GTF3A-209ENST00000640289 METTL22Q9BUU2 404 aaPredicted RBP16.85■□□□□ 0.29
GTF3A-209ENST00000640289 SUSD4Q5VX71 490 aa16.84■□□□□ 0.29
GTF3A-209ENST00000640289 ISCA1Q9BUE6 129 aa16.84■□□□□ 0.29
GTF3A-209ENST00000640289 NOB1Q9ULX3 412 aaKnown RBP16.84■□□□□ 0.29
GTF3A-209ENST00000640289 NUP98P52948 1817 aa16.83■□□□□ 0.28
GTF3A-209ENST00000640289 PRR5LQ6MZQ0 368 aa16.83■□□□□ 0.28
GTF3A-209ENST00000640289 NLRP10Q86W26 655 aa16.83■□□□□ 0.28
GTF3A-209ENST00000640289 NBPF5PQ86XG9 351 aaPredicted RBP16.83■□□□□ 0.28
GTF3A-209ENST00000640289 DNAAF4Q8WXU2 420 aa16.83■□□□□ 0.28
GTF3A-209ENST00000640289 FHDC1Q9C0D6 1143 aaPredicted RBP16.83■□□□□ 0.28
GTF3A-209ENST00000640289 ARFGEF2Q9Y6D5 1785 aa16.82■□□□□ 0.28
GTF3A-209ENST00000640289 BRPF1P55201 1214 aaPredicted RBP16.82■□□□□ 0.28
GTF3A-209ENST00000640289 PARP10Q53GL7 1025 aa16.82■□□□□ 0.28
GTF3A-209ENST00000640289 PTPRCP08575 1304 aa16.81■□□□□ 0.28
GTF3A-209ENST00000640289 NTSR2O95665 410 aa16.81■□□□□ 0.28
GTF3A-209ENST00000640289 IGKV5-2P06315 115 aa16.81■□□□□ 0.28
GTF3A-209ENST00000640289 CWF19L2Q2TBE0 894 aaKnown RBP16.81■□□□□ 0.28
GTF3A-209ENST00000640289 NUTM1Q86Y26 1132 aa16.81■□□□□ 0.28
GTF3A-209ENST00000640289 CNBD1Q8NA66 436 aa16.81■□□□□ 0.28
GTF3A-209ENST00000640289 C10orf71Q711Q0 1435 aa16.8■□□□□ 0.28
GTF3A-209ENST00000640289 NPHP1O15259 732 aa16.8■□□□□ 0.28
GTF3A-209ENST00000640289 NEXNQ0ZGT2 675 aa16.8■□□□□ 0.28
GTF3A-209ENST00000640289 SLC4A10Q6U841 1118 aa16.8■□□□□ 0.28
GTF3A-209ENST00000640289 TPTE2Q6XPS3 522 aa16.8■□□□□ 0.28
GTF3A-209ENST00000640289 PPP1R42Q7Z4L9 355 aa16.8■□□□□ 0.28
GTF3A-209ENST00000640289 FRAT1Q92837 279 aaPredicted RBP16.8■□□□□ 0.28
GTF3A-209ENST00000640289 NRXN2Q9P2S2 1712 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 KIF16BQ96L93 1317 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 TRIM28Q13263 835 aaKnown RBP16.79■□□□□ 0.28
GTF3A-209ENST00000640289 ERFEQ4G0M1 354 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 BEND3Q5T5X7 828 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 NLGN2Q8NFZ4 835 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 UTP14AQ9BVJ6 771 aaKnown RBP16.79■□□□□ 0.28
GTF3A-209ENST00000640289 NYXQ9GZU5 481 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 TRMT112Q9UI30 125 aaKnown RBP16.79■□□□□ 0.28
GTF3A-209ENST00000640289 RCAN3Q9UKA8 241 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 TNNQ9UQP3 1299 aa16.79■□□□□ 0.28
GTF3A-209ENST00000640289 ABCC12Q96J65 1359 aa16.78■□□□□ 0.28
GTF3A-209ENST00000640289 IBTKQ9P2D0 1353 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 120.6 ms