RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 ARFGEF2Q9Y6D5 1785 aa19.8■□□□□ 0.76
PNKP-218ENST00000625299 CAMTA2O94983 1202 aa19.8■□□□□ 0.76
PNKP-218ENST00000625299 STYK1Q6J9G0 422 aa19.8■□□□□ 0.76
PNKP-218ENST00000625299 GAS2L2Q8NHY3 880 aa19.8■□□□□ 0.76
PNKP-218ENST00000625299 KIF7Q2M1P5 1343 aa19.79■□□□□ 0.76
PNKP-218ENST00000625299 MASTLQ96GX5 879 aa19.79■□□□□ 0.76
PNKP-218ENST00000625299 SRGNP10124 158 aa19.78■□□□□ 0.76
PNKP-218ENST00000625299 PIP4K2AP48426 406 aaPredicted RBP19.78■□□□□ 0.76
PNKP-218ENST00000625299 SOGA3Q5TF21 947 aa19.78■□□□□ 0.76
PNKP-218ENST00000625299 DZIP3Q86Y13 1208 aaKnown RBP19.78■□□□□ 0.76
PNKP-218ENST00000625299 IQCA1LA6NCM1 817 aa19.77■□□□□ 0.76
PNKP-218ENST00000625299 COL3A1P02461 1466 aaPredicted RBP19.77■□□□□ 0.76
PNKP-218ENST00000625299 CNTNAP1P78357 1384 aa19.76■□□□□ 0.75
PNKP-218ENST00000625299 FOXN1O15353 648 aa19.76■□□□□ 0.75
PNKP-218ENST00000625299 KCNQ3O43525 872 aa19.76■□□□□ 0.75
PNKP-218ENST00000625299 EAPPQ56P03 285 aaPredicted RBP19.76■□□□□ 0.75
PNKP-218ENST00000625299 NBPF5PQ86XG9 351 aaPredicted RBP19.76■□□□□ 0.75
PNKP-218ENST00000625299 SCN4AP35499 1836 aa19.76■□□□□ 0.75
PNKP-218ENST00000625299 BTBD11A6QL63 1104 aa19.75■□□□□ 0.75
PNKP-218ENST00000625299 CCDC93Q567U6 631 aa19.75■□□□□ 0.75
PNKP-218ENST00000625299 LDHDQ86WU2 507 aa19.75■□□□□ 0.75
PNKP-218ENST00000625299 AIDAQ96BJ3 306 aa19.74■□□□□ 0.75
PNKP-218ENST00000625299 TAF1DQ9H5J8 278 aaPredicted RBP19.74■□□□□ 0.75
PNKP-218ENST00000625299 PASKQ96RG2 1323 aa19.74■□□□□ 0.75
PNKP-218ENST00000625299 PER1O15534 1290 aaPredicted RBP19.73■□□□□ 0.75
PNKP-218ENST00000625299 ZNF277Q9NRM2 450 aaPredicted RBP19.73■□□□□ 0.75
PNKP-218ENST00000625299 CLEC11AQ9Y240 323 aa19.73■□□□□ 0.75
PNKP-218ENST00000625299 USP16Q9Y5T5 823 aa19.73■□□□□ 0.75
PNKP-218ENST00000625299 ZNF541Q9H0D2 1346 aa19.73■□□□□ 0.75
PNKP-218ENST00000625299 PRAMEF22A3QJZ6 481 aa19.72■□□□□ 0.75
PNKP-218ENST00000625299 FAM177BA6PVY3 158 aa19.72■□□□□ 0.75
PNKP-218ENST00000625299 L3MBTL3Q96JM7 780 aaPredicted RBP19.72■□□□□ 0.75
PNKP-218ENST00000625299 ZNF652Q9Y2D9 606 aa19.72■□□□□ 0.75
PNKP-218ENST00000625299 CEMIPQ8WUJ3 1361 aa19.71■□□□□ 0.75
PNKP-218ENST00000625299 TMEM88BA6NKF7 163 aa19.71■□□□□ 0.75
PNKP-218ENST00000625299 NPR1P16066 1061 aa19.71■□□□□ 0.75
PNKP-218ENST00000625299 VEGFBP49765 207 aa19.71■□□□□ 0.75
PNKP-218ENST00000625299 FKBP4Q02790 459 aaKnown RBP eCLIP19.71■□□□□ 0.75
PNKP-218ENST00000625299 OLFM4Q6UX06 510 aa19.71■□□□□ 0.75
PNKP-218ENST00000625299 CCER1Q8TC90 406 aaPredicted RBP19.71■□□□□ 0.75
PNKP-218ENST00000625299 PRKAR2BP31323 418 aa19.7■□□□□ 0.74
PNKP-218ENST00000625299 C7orf43Q8WVR3 580 aa19.7■□□□□ 0.74
PNKP-218ENST00000625299 PHACTR3Q96KR7 559 aa19.7■□□□□ 0.74
PNKP-218ENST00000625299 HACL1Q9UJ83 578 aa19.7■□□□□ 0.74
PNKP-218ENST00000625299 CTCFP49711 727 aaPredicted RBP19.69■□□□□ 0.74
PNKP-218ENST00000625299 PRDM10Q9NQV6 1147 aa19.69■□□□□ 0.74
PNKP-218ENST00000625299 NIP7Q9Y221 180 aaKnown RBP eCLIP19.69■□□□□ 0.74
PNKP-218ENST00000625299 EPHX2P34913 555 aa19.68■□□□□ 0.74
PNKP-218ENST00000625299 CLEC4GQ6UXB4 293 aa19.68■□□□□ 0.74
PNKP-218ENST00000625299 RNF123Q5XPI4 1314 aa19.68■□□□□ 0.74
PNKP-218ENST00000625299 ITGBL1O95965 494 aaPredicted RBP19.67■□□□□ 0.74
PNKP-218ENST00000625299 SNRPA1P09661 255 aaKnown RBP19.67■□□□□ 0.74
PNKP-218ENST00000625299 TPTE2Q6XPS3 522 aa19.67■□□□□ 0.74
PNKP-218ENST00000625299 GTF2E1P29083 439 aaPredicted RBP19.66■□□□□ 0.74
PNKP-218ENST00000625299 MAP1SQ66K74 1059 aaPredicted RBP19.66■□□□□ 0.74
PNKP-218ENST00000625299 MCM10Q7L590 875 aa19.66■□□□□ 0.74
PNKP-218ENST00000625299 RTKN2Q8IZC4 609 aa19.66■□□□□ 0.74
PNKP-218ENST00000625299 RTF1Q92541 710 aaKnown RBP19.66■□□□□ 0.74
PNKP-218ENST00000625299 ADAMTSL1Q8N6G6 1762 aa19.65■□□□□ 0.74
PNKP-218ENST00000625299 IARSP41252 1262 aaKnown RBP19.65■□□□□ 0.74
PNKP-218ENST00000625299 LBX1P52954 281 aa19.65■□□□□ 0.74
PNKP-218ENST00000625299 RSPH6AQ9H0K4 717 aa19.65■□□□□ 0.74
PNKP-218ENST00000625299 PNMA8AQ86V59 439 aaPredicted RBP19.64■□□□□ 0.73
PNKP-218ENST00000625299 CNTROBQ8N137 903 aa19.64■□□□□ 0.73
PNKP-218ENST00000625299 SYNE4Q8N205 404 aa19.64■□□□□ 0.73
PNKP-218ENST00000625299 CFAP53Q96M91 514 aa19.64■□□□□ 0.73
PNKP-218ENST00000625299 NPC1L1Q9UHC9 1359 aa19.63■□□□□ 0.73
PNKP-218ENST00000625299 KLRG2A4D1S0 409 aaPredicted RBP19.63■□□□□ 0.73
PNKP-218ENST00000625299 NBPF26B4DH59 902 aa19.63■□□□□ 0.73
PNKP-218ENST00000625299 NBPF10Q6P3W6 841 aaKnown RBP19.63■□□□□ 0.73
PNKP-218ENST00000625299 NBPF15Q8N660 670 aa19.63■□□□□ 0.73
PNKP-218ENST00000625299 WBP1LQ9NX94 342 aa19.63■□□□□ 0.73
PNKP-218ENST00000625299 ABT1Q9ULW3 272 aaKnown RBP19.63■□□□□ 0.73
PNKP-218ENST00000625299 FZD9O00144 591 aa19.62■□□□□ 0.73
PNKP-218ENST00000625299 ALDH1B1P30837 517 aa19.62■□□□□ 0.73
PNKP-218ENST00000625299 DCTN1Q14203 1278 aa19.62■□□□□ 0.73
PNKP-218ENST00000625299 HLFQ16534 295 aa19.62■□□□□ 0.73
PNKP-218ENST00000625299 DEFB115Q30KQ5 88 aa19.62■□□□□ 0.73
PNKP-218ENST00000625299 GJA3Q9Y6H8 435 aa19.62■□□□□ 0.73
PNKP-218ENST00000625299 U2AF1L5P0DN76 240 aaPredicted RBP19.61■□□□□ 0.73
PNKP-218ENST00000625299 U2AF1Q01081 240 aaKnown RBP eCLIP19.61■□□□□ 0.73
PNKP-218ENST00000625299 GPC2Q8N158 579 aa19.61■□□□□ 0.73
PNKP-218ENST00000625299 NGEFQ8N5V2 710 aa19.61■□□□□ 0.73
PNKP-218ENST00000625299 JDP2Q8WYK2 163 aa19.61■□□□□ 0.73
PNKP-218ENST00000625299 RASSF10A6NK89 507 aa19.6■□□□□ 0.73
PNKP-218ENST00000625299 PAXIP1Q6ZW49 1069 aaPredicted RBP19.6■□□□□ 0.73
PNKP-218ENST00000625299 NUDCQ9Y266 331 aa19.6■□□□□ 0.73
PNKP-218ENST00000625299 LAMB4A4D0S4 1761 aa19.6■□□□□ 0.73
PNKP-218ENST00000625299 ABCC12Q96J65 1359 aa19.59■□□□□ 0.73
PNKP-218ENST00000625299 WDR33Q9C0J8 1336 aaKnown RBP19.59■□□□□ 0.73
PNKP-218ENST00000625299 HSPA8P11142 646 aaKnown RBP19.59■□□□□ 0.73
PNKP-218ENST00000625299 EIF6P56537 245 aaKnown RBP19.59■□□□□ 0.73
PNKP-218ENST00000625299 NUTM1Q86Y26 1132 aa19.59■□□□□ 0.73
PNKP-218ENST00000625299 LMOD1P29536 600 aaPredicted RBP19.58■□□□□ 0.72
PNKP-218ENST00000625299 GRM1Q13255 1194 aa19.58■□□□□ 0.72
PNKP-218ENST00000625299 RGL2O15211 777 aa19.57■□□□□ 0.72
PNKP-218ENST00000625299 MAP2K1Q02750 393 aaPredicted RBP19.57■□□□□ 0.72
PNKP-218ENST00000625299 RPGRQ92834 1020 aaKnown RBP19.57■□□□□ 0.72
PNKP-218ENST00000625299 PSMD1Q99460 953 aa19.57■□□□□ 0.72
PNKP-218ENST00000625299 MIS18AQ9NYP9 233 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms