RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 DIP2BQ9P265 1576 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 RNF17Q9BXT8 1623 aaKnown RBP15.2■□□□□ 0.02
MSH6-215ENST00000622629 ABCC3O15438 1527 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 GUCY1B3Q02153 619 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 RRP12Q5JTH9 1297 aaKnown RBP15.2■□□□□ 0.02
MSH6-215ENST00000622629 PKP1Q13835 747 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 SBNO1A3KN83 1393 aa15.2■□□□□ 0.02
MSH6-215ENST00000622629 ZNF853P0CG23 659 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 PDIA4P13667 645 aaKnown RBP15.19■□□□□ 0.02
MSH6-215ENST00000622629 VPS37DQ86XT2 251 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 HOMER1Q86YM7 354 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 RBM8AQ9Y5S9 174 aaKnown RBP15.19■□□□□ 0.02
MSH6-215ENST00000622629 GIMAP6Q6P9H5 292 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 ANKRD13DQ6ZTN6 518 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 PRR36Q9H6K5 1346 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 GCP02774 474 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 ZSCAN22P10073 491 aaPredicted RBP15.19■□□□□ 0.02
MSH6-215ENST00000622629 AK2P54819 239 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 CHAMP1Q96JM3 812 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 MEX3CQ5U5Q3 659 aaKnown RBP15.19■□□□□ 0.02
MSH6-215ENST00000622629 DDX46Q7L014 1031 aaKnown RBP15.19■□□□□ 0.02
MSH6-215ENST00000622629 IL17REQ8NFR9 667 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 ZNF396Q96N95 335 aaPredicted RBP15.19■□□□□ 0.02
MSH6-215ENST00000622629 TBC1D2BQ9UPU7 963 aa15.19■□□□□ 0.02
MSH6-215ENST00000622629 PES1O00541 588 aaKnown RBP15.18■□□□□ 0.02
MSH6-215ENST00000622629 TPD52L1Q16890 204 aaPredicted RBP15.18■□□□□ 0.02
MSH6-215ENST00000622629 LRRC2Q9BYS8 371 aa15.18■□□□□ 0.02
MSH6-215ENST00000622629 CFAP45Q9UL16 551 aa15.18■□□□□ 0.02
MSH6-215ENST00000622629 ABCA6Q8N139 1617 aa15.18■□□□□ 0.02
MSH6-215ENST00000622629 GOLIM4O00461 696 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 IFIT1P09914 478 aaKnown RBP15.17■□□□□ 0.02
MSH6-215ENST00000622629 CCT2P78371 535 aaKnown RBP15.17■□□□□ 0.02
MSH6-215ENST00000622629 SAFBQ15424 915 aaKnown RBP eCLIP15.17■□□□□ 0.02
MSH6-215ENST00000622629 LINS1Q8NG48 757 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 IP6K1Q92551 441 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 SNRKQ9NRH2 765 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 ERICH2A1L162 156 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 DHX16O60231 1041 aaKnown RBP15.17■□□□□ 0.02
MSH6-215ENST00000622629 IFNL2Q8IZJ0 200 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 CCAR2Q8N163 923 aaKnown RBP15.17■□□□□ 0.02
MSH6-215ENST00000622629 NFATC2IPQ8NCF5 419 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 USP44Q9H0E7 712 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 ALDH1L1O75891 902 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 BRPF1P55201 1214 aaPredicted RBP15.17■□□□□ 0.02
MSH6-215ENST00000622629 FILIP1Q7Z7B0 1213 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 CADPS2Q86UW7 1296 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 SCAND2PQ9GZW5 306 aaPredicted RBP15.17■□□□□ 0.02
MSH6-215ENST00000622629 NAT10Q9H0A0 1025 aaKnown RBP15.17■□□□□ 0.02
MSH6-215ENST00000622629 KIAA0232Q92628 1395 aa15.17■□□□□ 0.02
MSH6-215ENST00000622629 NBPF6Q5VWK0 638 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 CABLES1Q8TDN4 633 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 NBPF4Q96M43 638 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 TPM3P06753 285 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 UBE2HP62256 183 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 DNM1Q05193 864 aaKnown RBP15.16■□□□□ 0.02
MSH6-215ENST00000622629 IDH1O75874 414 aaKnown RBP15.16■□□□□ 0.02
MSH6-215ENST00000622629 SMC2O95347 1197 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 HMGN5P82970 282 aaKnown RBP15.16■□□□□ 0.02
MSH6-215ENST00000622629 KLHL34Q8N239 644 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 ZNF830Q96NB3 372 aaPredicted RBP15.16■□□□□ 0.02
MSH6-215ENST00000622629 ORAI2Q96SN7 254 aa15.16■□□□□ 0.02
MSH6-215ENST00000622629 KCNQ3O43525 872 aa15.15■□□□□ 0.02
MSH6-215ENST00000622629 ADCY5O95622 1261 aa15.15■□□□□ 0.02
MSH6-215ENST00000622629 GAS2L3Q86XJ1 694 aa15.15■□□□□ 0.02
MSH6-215ENST00000622629 KLHDC4Q8TBB5 520 aa15.15■□□□□ 0.02
MSH6-215ENST00000622629 RBSNQ9H1K0 784 aa15.15■□□□□ 0.02
MSH6-215ENST00000622629 PALD1Q9ULE6 856 aa15.15■□□□□ 0.02
MSH6-215ENST00000622629 SNRPA1P09661 255 aaKnown RBP15.15■□□□□ 0.02
MSH6-215ENST00000622629 NMIQ13287 307 aaPredicted RBP15.15■□□□□ 0.02
MSH6-215ENST00000622629 AATKQ6ZMQ8 1374 aa15.14■□□□□ 0.01
MSH6-215ENST00000622629 ADAMTS2O95450 1211 aa15.14■□□□□ 0.01
MSH6-215ENST00000622629 DDX17Q92841 729 aaKnown RBP15.14■□□□□ 0.01
MSH6-215ENST00000622629 U3KPZ7 1027 aaPredicted RBP15.14■□□□□ 0.01
MSH6-215ENST00000622629 FAM135BQ49AJ0 1406 aa15.14■□□□□ 0.01
MSH6-215ENST00000622629 INTS4Q96HW7 963 aaKnown RBP15.14■□□□□ 0.01
MSH6-215ENST00000622629 BRF1Q92994 677 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 NEK1Q96PY6 1258 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.13■□□□□ 0.012e-8■□□□□ 9.7
MSH6-215ENST00000622629 C19orf44Q9H6X5 657 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 ROBO2Q9HCK4 1378 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 KAT6BQ8WYB5 2073 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 RNMTO43148 476 aaKnown RBP15.13■□□□□ 0.01
MSH6-215ENST00000622629 SYT1P21579 422 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 LMBR1LQ6UX01 489 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 LMBRD1Q9NUN5 540 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 LAMC1P11047 1609 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 SIRT1Q96EB6 747 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 BICC1Q9H694 974 aaKnown RBP15.13■□□□□ 0.01
MSH6-215ENST00000622629 CTNNA3Q9UI47 895 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 F13A1P00488 732 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 HAND2P61296 217 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 METTL24Q5JXM2 366 aa15.13■□□□□ 0.01
MSH6-215ENST00000622629 DIP2CQ9Y2E4 1556 aa15.12■□□□□ 0.01
MSH6-215ENST00000622629 TTC41PQ6P2S7 1318 aa15.12■□□□□ 0.01
MSH6-215ENST00000622629 SGSM2O43147 1006 aa15.12■□□□□ 0.01
MSH6-215ENST00000622629 RAB11FIP4Q86YS3 637 aa15.12■□□□□ 0.01
MSH6-215ENST00000622629 MAP7D2Q96T17 732 aa15.12■□□□□ 0.01
MSH6-215ENST00000622629 GPTP24298 496 aa15.11■□□□□ 0.01
MSH6-215ENST00000622629 IMMTQ16891 758 aaKnown RBP15.11■□□□□ 0.01
MSH6-215ENST00000622629 ATP7BP35670 1465 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms